miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8145 3' -55.1 NC_001978.2 + 813 0.68 0.508563
Target:  5'- gGC-UCGUCGGCuUCaCCUUCGGCGCc- -3'
miRNA:   3'- -UGaAGCGGUUGcAG-GGAAGUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 4163 0.66 0.597174
Target:  5'- uCUUCGCCGACuucgCCCaggUUCAGCGg-- -3'
miRNA:   3'- uGAAGCGGUUGca--GGG---AAGUCGCgag -5'
8145 3' -55.1 NC_001978.2 + 5980 0.67 0.574655
Target:  5'- --aUCGUUuACGaUUCCUUCAGCGCg- -3'
miRNA:   3'- ugaAGCGGuUGC-AGGGAAGUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 7216 0.71 0.326563
Target:  5'- cCUUCGCCAcccauguugaccAUGUUCCggcggUCAGCGCg- -3'
miRNA:   3'- uGAAGCGGU------------UGCAGGGa----AGUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 7795 0.66 0.639107
Target:  5'- cACUUCGCCGgacACaaacgcgucguacaGUCCCagcgaagCGGCGCUg -3'
miRNA:   3'- -UGAAGCGGU---UG--------------CAGGGaa-----GUCGCGAg -5'
8145 3' -55.1 NC_001978.2 + 8694 0.69 0.456044
Target:  5'- gGCUUCGCCuuc--CCCUUCAG-GUUCa -3'
miRNA:   3'- -UGAAGCGGuugcaGGGAAGUCgCGAG- -5'
8145 3' -55.1 NC_001978.2 + 8875 0.66 0.606222
Target:  5'- cGCUUCGCCcccgaccGGCG-CgCUUCGugucucuGCGCUCa -3'
miRNA:   3'- -UGAAGCGG-------UUGCaGgGAAGU-------CGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 9244 0.67 0.563465
Target:  5'- --gUUGCCAAaGaCCCUUCAGgGCUUc -3'
miRNA:   3'- ugaAGCGGUUgCaGGGAAGUCgCGAG- -5'
8145 3' -55.1 NC_001978.2 + 9880 0.7 0.406586
Target:  5'- gACUUCGCCGcgcCGUCgaCCUUgccCAGCGuCUCa -3'
miRNA:   3'- -UGAAGCGGUu--GCAG--GGAA---GUCGC-GAG- -5'
8145 3' -55.1 NC_001978.2 + 11895 0.69 0.456044
Target:  5'- ---cCGCgAAUGUCggagCCUUCGGCGUUCg -3'
miRNA:   3'- ugaaGCGgUUGCAG----GGAAGUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 12331 0.71 0.334852
Target:  5'- cGCUUCGCCGACgGUCCCgacaCGGCcGgaCa -3'
miRNA:   3'- -UGAAGCGGUUG-CAGGGaa--GUCG-CgaG- -5'
8145 3' -55.1 NC_001978.2 + 13152 0.66 0.642511
Target:  5'- cGCUUCaGCCuggGCGUUCCggccuugUGGUGCUCc -3'
miRNA:   3'- -UGAAG-CGGu--UGCAGGGaa-----GUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 15267 0.68 0.466321
Target:  5'- ----aGgUAAcCGUgCCCUUCAGCGCUCg -3'
miRNA:   3'- ugaagCgGUU-GCA-GGGAAGUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 15507 0.67 0.574655
Target:  5'- gACUaCGCCGACGuacguugccgUCCCggguccCAGCGCg- -3'
miRNA:   3'- -UGAaGCGGUUGC----------AGGGaa----GUCGCGag -5'
8145 3' -55.1 NC_001978.2 + 16296 0.66 0.642511
Target:  5'- gGCUUCGuguugaCCGACGUCa---CGGCGUUCg -3'
miRNA:   3'- -UGAAGC------GGUUGCAGggaaGUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 16362 0.69 0.44589
Target:  5'- --aUUGCCAACGUUCC--CAGCGC-Cg -3'
miRNA:   3'- ugaAGCGGUUGCAGGGaaGUCGCGaG- -5'
8145 3' -55.1 NC_001978.2 + 17311 0.68 0.466321
Target:  5'- gGCgUUgGUCGGCGUaUCCggcggUCGGCGCUCa -3'
miRNA:   3'- -UG-AAgCGGUUGCA-GGGa----AGUCGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 17505 0.66 0.585894
Target:  5'- ---aCGCCGuCG-CCC-UCAGCGCUg -3'
miRNA:   3'- ugaaGCGGUuGCaGGGaAGUCGCGAg -5'
8145 3' -55.1 NC_001978.2 + 17646 0.69 0.435864
Target:  5'- aACgUCGCCAACGUCgCCggUCGccuuGUGCUUg -3'
miRNA:   3'- -UGaAGCGGUUGCAG-GGa-AGU----CGCGAG- -5'
8145 3' -55.1 NC_001978.2 + 17930 0.73 0.254746
Target:  5'- aGCUUCGUCAGCGaCCCUucgcccggcacgccgUCAGCGUc- -3'
miRNA:   3'- -UGAAGCGGUUGCaGGGA---------------AGUCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.