miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8145 5' -50.4 NC_001978.2 + 14854 0.66 0.887294
Target:  5'- cAUGAGCcuuaCCGaUAUCAcCGGUCAcGCCg -3'
miRNA:   3'- -UACUUGc---GGC-GUAGUuGCUAGUuCGG- -5'
8145 5' -50.4 NC_001978.2 + 27503 0.66 0.887294
Target:  5'- --cGGCaGgCGCGUCAGCGAacuUCAcGCCg -3'
miRNA:   3'- uacUUG-CgGCGUAGUUGCU---AGUuCGG- -5'
8145 5' -50.4 NC_001978.2 + 7867 0.66 0.887294
Target:  5'- cUGAAuCGCCGgAgccUCAACGcUCAgcgaagAGCCg -3'
miRNA:   3'- uACUU-GCGGCgU---AGUUGCuAGU------UCGG- -5'
8145 5' -50.4 NC_001978.2 + 17098 0.66 0.879317
Target:  5'- -cGAAgGCCGagGUCGGCuAUCAcgaaGGCCg -3'
miRNA:   3'- uaCUUgCGGCg-UAGUUGcUAGU----UCGG- -5'
8145 5' -50.4 NC_001978.2 + 11266 0.66 0.879317
Target:  5'- -cGAACGUCggGCAUCGuaag-CAAGCCg -3'
miRNA:   3'- uaCUUGCGG--CGUAGUugcuaGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 18036 0.66 0.879317
Target:  5'- --cAugGCCGUA---ACGAUCGGGCUc -3'
miRNA:   3'- uacUugCGGCGUaguUGCUAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 22461 0.66 0.879317
Target:  5'- -cGGuUGCCGUccggGUCAAUGAUgAAGUCg -3'
miRNA:   3'- uaCUuGCGGCG----UAGUUGCUAgUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 33260 0.66 0.879317
Target:  5'- uUGGGCGCUacgGCGUgAAggUGGUCGAGCa -3'
miRNA:   3'- uACUUGCGG---CGUAgUU--GCUAGUUCGg -5'
8145 5' -50.4 NC_001978.2 + 28240 0.66 0.871051
Target:  5'- -gGcGCGCCGUAUagaucACG-UCGAGCCc -3'
miRNA:   3'- uaCuUGCGGCGUAgu---UGCuAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 36790 0.66 0.871051
Target:  5'- -gGGGCGCCGUcUCcggcuccguGACGGgcUCAGGCUc -3'
miRNA:   3'- uaCUUGCGGCGuAG---------UUGCU--AGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 11442 0.66 0.871051
Target:  5'- cGUGAugGCacggGCAcgcaAGCGGUCGGcGCCg -3'
miRNA:   3'- -UACUugCGg---CGUag--UUGCUAGUU-CGG- -5'
8145 5' -50.4 NC_001978.2 + 4594 0.66 0.871051
Target:  5'- --cGACGUCGCGacCAACGGUCGuGUCg -3'
miRNA:   3'- uacUUGCGGCGUa-GUUGCUAGUuCGG- -5'
8145 5' -50.4 NC_001978.2 + 36860 0.66 0.870209
Target:  5'- -gGAACGUCGuCGUCGGCaGGcuccggcUCAGGCUc -3'
miRNA:   3'- uaCUUGCGGC-GUAGUUG-CU-------AGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 31352 0.66 0.862505
Target:  5'- cUGAucACGUCGcCGUCGGCGuu--GGCCg -3'
miRNA:   3'- uACU--UGCGGC-GUAGUUGCuaguUCGG- -5'
8145 5' -50.4 NC_001978.2 + 18697 0.66 0.853687
Target:  5'- -gGAGCGCUGCcgccuUCAACgGGUCA-GCg -3'
miRNA:   3'- uaCUUGCGGCGu----AGUUG-CUAGUuCGg -5'
8145 5' -50.4 NC_001978.2 + 22333 0.67 0.844607
Target:  5'- --cGGCGUCGgguugcCGUCGGCG-UCGAGCCa -3'
miRNA:   3'- uacUUGCGGC------GUAGUUGCuAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 8245 0.67 0.844607
Target:  5'- -cGGACGCCGUGaccUUAAUGGacuugUCGAGCUu -3'
miRNA:   3'- uaCUUGCGGCGU---AGUUGCU-----AGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 650 0.67 0.844607
Target:  5'- cUGAACGCgGCGUaCAcggcGCGGgu-GGCCu -3'
miRNA:   3'- uACUUGCGgCGUA-GU----UGCUaguUCGG- -5'
8145 5' -50.4 NC_001978.2 + 7941 0.67 0.844607
Target:  5'- -cGAGC-CCGgAaCGcCGGUCGAGCCg -3'
miRNA:   3'- uaCUUGcGGCgUaGUuGCUAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 31807 0.67 0.844607
Target:  5'- cUGGGCgGCuCGCGUCGGCaaguucGGUCAAGUg -3'
miRNA:   3'- uACUUG-CG-GCGUAGUUG------CUAGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.