miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8145 5' -50.4 NC_001978.2 + 36469 1.1 0.001747
Target:  5'- gAUGAACGCCGCAUCAACGAUCAAGCCc -3'
miRNA:   3'- -UACUUGCGGCGUAGUUGCUAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 32550 0.76 0.332377
Target:  5'- uUGAGCGCCccagguCGUCAGuCGGUCGAGUCg -3'
miRNA:   3'- uACUUGCGGc-----GUAGUU-GCUAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 15385 0.75 0.385838
Target:  5'- -cGAACGCCgacguugccguugGCGUCAAUGAUCu-GCCc -3'
miRNA:   3'- uaCUUGCGG-------------CGUAGUUGCUAGuuCGG- -5'
8145 5' -50.4 NC_001978.2 + 12308 0.75 0.396415
Target:  5'- -----aGCCGCG-CAACGAUCAAGUCc -3'
miRNA:   3'- uacuugCGGCGUaGUUGCUAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 33826 0.74 0.436404
Target:  5'- cGUG-ACGUCGC-UCGACuGUCGGGCCg -3'
miRNA:   3'- -UACuUGCGGCGuAGUUGcUAGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 1755 0.74 0.45725
Target:  5'- cUGAACGUCGCAcaCGGCGG-CAAGCUu -3'
miRNA:   3'- uACUUGCGGCGUa-GUUGCUaGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 16225 0.72 0.568349
Target:  5'- -cGAACGCCGUGaCGuCGGUCAacacgaAGCCg -3'
miRNA:   3'- uaCUUGCGGCGUaGUuGCUAGU------UCGG- -5'
8145 5' -50.4 NC_001978.2 + 1386 0.72 0.568349
Target:  5'- -gGAAcCGUCGCGUCAGCGGgaauguGCCg -3'
miRNA:   3'- uaCUU-GCGGCGUAGUUGCUaguu--CGG- -5'
8145 5' -50.4 NC_001978.2 + 19125 0.71 0.591539
Target:  5'- -cGAGCGCgGCAacaggagugagUCAACGAUCcGGUUg -3'
miRNA:   3'- uaCUUGCGgCGU-----------AGUUGCUAGuUCGG- -5'
8145 5' -50.4 NC_001978.2 + 31863 0.71 0.591539
Target:  5'- uUGAG-GUCGCGUCGuACGGauUCGAGCCc -3'
miRNA:   3'- uACUUgCGGCGUAGU-UGCU--AGUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 17811 0.71 0.603197
Target:  5'- ---uAUGCCGCGuuUCAGCGGUCGuugGGCUa -3'
miRNA:   3'- uacuUGCGGCGU--AGUUGCUAGU---UCGG- -5'
8145 5' -50.4 NC_001978.2 + 11780 0.71 0.613714
Target:  5'- -gGGAaGCCGCAUCcgUGAUCAcgauggaagggcgAGCCg -3'
miRNA:   3'- uaCUUgCGGCGUAGuuGCUAGU-------------UCGG- -5'
8145 5' -50.4 NC_001978.2 + 1644 0.71 0.614883
Target:  5'- cUGAGCGUCGCcccgGUCGGCuAUCAGGUg -3'
miRNA:   3'- uACUUGCGGCG----UAGUUGcUAGUUCGg -5'
8145 5' -50.4 NC_001978.2 + 9262 0.71 0.614883
Target:  5'- uAUGGACGUCGCGacgguccugggCGACGAagUUggGCCg -3'
miRNA:   3'- -UACUUGCGGCGUa----------GUUGCU--AGuuCGG- -5'
8145 5' -50.4 NC_001978.2 + 4088 0.71 0.623074
Target:  5'- -cGggUGCCGCugaaccugggcgaaGUCGGCGAa-GAGCCg -3'
miRNA:   3'- uaCuuGCGGCG--------------UAGUUGCUagUUCGG- -5'
8145 5' -50.4 NC_001978.2 + 12428 0.7 0.638295
Target:  5'- -cGGACGUCGgGUCAguacACGgAUCAGGCg -3'
miRNA:   3'- uaCUUGCGGCgUAGU----UGC-UAGUUCGg -5'
8145 5' -50.4 NC_001978.2 + 7275 0.7 0.648828
Target:  5'- -cGAACGCCGcCGUCAgaaGCGAaccggcuccggcgUCGAGUa -3'
miRNA:   3'- uaCUUGCGGC-GUAGU---UGCU-------------AGUUCGg -5'
8145 5' -50.4 NC_001978.2 + 11002 0.7 0.649998
Target:  5'- -cGAACGCCGaccCGUUcGCGAUUggGCg -3'
miRNA:   3'- uaCUUGCGGC---GUAGuUGCUAGuuCGg -5'
8145 5' -50.4 NC_001978.2 + 12112 0.7 0.649998
Target:  5'- -gGAAgcCGCCGCGcgccgUAGCGAUCAccuGCCa -3'
miRNA:   3'- uaCUU--GCGGCGUa----GUUGCUAGUu--CGG- -5'
8145 5' -50.4 NC_001978.2 + 40123 0.69 0.696495
Target:  5'- -gGAACGCC-CAUCGAgaagcgcgcuuCGAUCAcgugggcgaAGCCg -3'
miRNA:   3'- uaCUUGCGGcGUAGUU-----------GCUAGU---------UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.