miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8146 3' -58.2 NC_001978.2 + 17320 0.66 0.495383
Target:  5'- cGGCguaUCCgGCggUCGGCGcucagguguucuUCGGCAacgggGGCGg -3'
miRNA:   3'- -CCGa--AGGgCG--AGUCGC------------AGCCGU-----UCGC- -5'
8146 3' -58.2 NC_001978.2 + 3228 0.66 0.474932
Target:  5'- cGGCccauaccgCCCgGCUCAGCGuUCGGauaguCGAGCc -3'
miRNA:   3'- -CCGaa------GGG-CGAGUCGC-AGCC-----GUUCGc -5'
8146 3' -58.2 NC_001978.2 + 2985 0.66 0.474932
Target:  5'- gGGCg--CCGUUCGGCuucCGGCGAGaCGg -3'
miRNA:   3'- -CCGaagGGCGAGUCGca-GCCGUUC-GC- -5'
8146 3' -58.2 NC_001978.2 + 40655 0.66 0.474932
Target:  5'- cGGCguugccUCCCuaGCUCAGU-UCGGUuaGAGCGc -3'
miRNA:   3'- -CCGa-----AGGG--CGAGUCGcAGCCG--UUCGC- -5'
8146 3' -58.2 NC_001978.2 + 34783 0.66 0.474932
Target:  5'- gGGCUUCCCagGCUUAGCGcUUGaagauGUggGCu -3'
miRNA:   3'- -CCGAAGGG--CGAGUCGC-AGC-----CGuuCGc -5'
8146 3' -58.2 NC_001978.2 + 17035 0.66 0.474932
Target:  5'- aGGUUga--GaCUCAGaCGUUGGCAAGCGc -3'
miRNA:   3'- -CCGAagggC-GAGUC-GCAGCCGUUCGC- -5'
8146 3' -58.2 NC_001978.2 + 40270 0.66 0.47392
Target:  5'- gGGCUUCCUGgggCAGCGggaagggUCGGCcGGUc -3'
miRNA:   3'- -CCGAAGGGCga-GUCGC-------AGCCGuUCGc -5'
8146 3' -58.2 NC_001978.2 + 26188 0.66 0.464865
Target:  5'- aGGUcgCCCaggauGCgcgCAGCGUCGGCGcccugAGUGc -3'
miRNA:   3'- -CCGaaGGG-----CGa--GUCGCAGCCGU-----UCGC- -5'
8146 3' -58.2 NC_001978.2 + 30534 0.66 0.464865
Target:  5'- gGGC-UCUucgucguagUGCUUAGCGugUCGGCAAGgGa -3'
miRNA:   3'- -CCGaAGG---------GCGAGUCGC--AGCCGUUCgC- -5'
8146 3' -58.2 NC_001978.2 + 34348 0.66 0.454911
Target:  5'- aGGgUUCgCGCgucguguaCAGCGUggcucCGGCAAGCu -3'
miRNA:   3'- -CCgAAGgGCGa-------GUCGCA-----GCCGUUCGc -5'
8146 3' -58.2 NC_001978.2 + 5378 0.66 0.454911
Target:  5'- gGGCga-CCGC-CGGgauUGUCGGCGAGaCGg -3'
miRNA:   3'- -CCGaagGGCGaGUC---GCAGCCGUUC-GC- -5'
8146 3' -58.2 NC_001978.2 + 27902 0.66 0.454911
Target:  5'- uGCUUCaguaCGUagUCGGCGgcuUCGGCgAAGCGu -3'
miRNA:   3'- cCGAAGg---GCG--AGUCGC---AGCCG-UUCGC- -5'
8146 3' -58.2 NC_001978.2 + 36128 0.67 0.445074
Target:  5'- aGUggCCCGUgUAGCacGUCGGCGAGUa -3'
miRNA:   3'- cCGaaGGGCGaGUCG--CAGCCGUUCGc -5'
8146 3' -58.2 NC_001978.2 + 4653 0.67 0.434391
Target:  5'- gGGCUUCCCGUUCGGgagaucacggcuaUGgacgUGGuCGAGCu -3'
miRNA:   3'- -CCGAAGGGCGAGUC-------------GCa---GCC-GUUCGc -5'
8146 3' -58.2 NC_001978.2 + 28908 0.67 0.425763
Target:  5'- -cCUUCaugCGCUUcaCGUCGGCGAGCGc -3'
miRNA:   3'- ccGAAGg--GCGAGucGCAGCCGUUCGC- -5'
8146 3' -58.2 NC_001978.2 + 35617 0.67 0.416296
Target:  5'- cGGCUcgacaUCCggCGCUgAGUgaGUCGGCA-GCGg -3'
miRNA:   3'- -CCGA-----AGG--GCGAgUCG--CAGCCGUuCGC- -5'
8146 3' -58.2 NC_001978.2 + 16297 0.67 0.416296
Target:  5'- cGGCUUCgUGUUgaccgacgucaCGGCGuucgggUCGGCAAGCu -3'
miRNA:   3'- -CCGAAGgGCGA-----------GUCGC------AGCCGUUCGc -5'
8146 3' -58.2 NC_001978.2 + 4851 0.67 0.416296
Target:  5'- cGGCUgggaaUCgCGCUCuucaGUCGGCGGcGCGa -3'
miRNA:   3'- -CCGA-----AGgGCGAGucg-CAGCCGUU-CGC- -5'
8146 3' -58.2 NC_001978.2 + 18174 0.67 0.406959
Target:  5'- gGGCcaaCCG-UCAGCGUCGGCGccggAGUa -3'
miRNA:   3'- -CCGaagGGCgAGUCGCAGCCGU----UCGc -5'
8146 3' -58.2 NC_001978.2 + 37874 0.67 0.406959
Target:  5'- gGGCgccgUCCCGUaCAaCGUCGcGCGugAGCGg -3'
miRNA:   3'- -CCGa---AGGGCGaGUcGCAGC-CGU--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.