miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8146 5' -57.5 NC_001978.2 + 36136 0.66 0.505969
Target:  5'- gGCGgGugaguGGCCCGugUagcacgUCGGCGAGuAGGg -3'
miRNA:   3'- aUGUgC-----CCGGGCugA------AGCCGCUC-UUC- -5'
8146 5' -57.5 NC_001978.2 + 12559 0.67 0.46476
Target:  5'- gACAUGGGUgcggcUCGACUcCGGCGAuugguucacGAAGg -3'
miRNA:   3'- aUGUGCCCG-----GGCUGAaGCCGCU---------CUUC- -5'
8146 5' -57.5 NC_001978.2 + 27414 0.67 0.46476
Target:  5'- aACACGGGUauugCG-CUugUCGGCGuGAAGu -3'
miRNA:   3'- aUGUGCCCGg---GCuGA--AGCCGCuCUUC- -5'
8146 5' -57.5 NC_001978.2 + 36074 0.67 0.444819
Target:  5'- cUACACGGGCcacucacccgCCGACaccugggCGcGCGAGGAa -3'
miRNA:   3'- -AUGUGCCCG----------GGCUGaa-----GC-CGCUCUUc -5'
8146 5' -57.5 NC_001978.2 + 2976 0.67 0.444819
Target:  5'- uUACAaccUGGGCgCCGuucgGCUUcCGGCGAGAc- -3'
miRNA:   3'- -AUGU---GCCCG-GGC----UGAA-GCCGCUCUuc -5'
8146 5' -57.5 NC_001978.2 + 37748 0.68 0.397164
Target:  5'- uUGCGCGcuGCCCGACgaCGGCGAc--- -3'
miRNA:   3'- -AUGUGCc-CGGGCUGaaGCCGCUcuuc -5'
8146 5' -57.5 NC_001978.2 + 23776 0.68 0.379042
Target:  5'- cGCAuCGGGCCaCG-CUUCGGCGuGu-- -3'
miRNA:   3'- aUGU-GCCCGG-GCuGAAGCCGCuCuuc -5'
8146 5' -57.5 NC_001978.2 + 4054 0.69 0.344498
Target:  5'- gACGCcccuGCCCGACggauUgGGCGAGAAGu -3'
miRNA:   3'- aUGUGcc--CGGGCUGa---AgCCGCUCUUC- -5'
8146 5' -57.5 NC_001978.2 + 5369 0.7 0.278111
Target:  5'- -uCACGGGUCgGGCgaccgccgggauugUCGGCGAGAc- -3'
miRNA:   3'- auGUGCCCGGgCUGa-------------AGCCGCUCUuc -5'
8146 5' -57.5 NC_001978.2 + 36675 1.06 0.000686
Target:  5'- gUACACGGGCCCGACUUCGGCGAGAAGc -3'
miRNA:   3'- -AUGUGCCCGGGCUGAAGCCGCUCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.