miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8147 5' -56.9 NC_001978.2 + 12149 0.66 0.570441
Target:  5'- aCGGUCcuuaUCGGGGGCACGg--CugGg -3'
miRNA:   3'- cGUCAGuc--AGCCCCCGUGCagaGugU- -5'
8147 5' -56.9 NC_001978.2 + 25753 0.66 0.570441
Target:  5'- cGCcGUUgccGUCcGGGGUGCGUCUCugGu -3'
miRNA:   3'- -CGuCAGu--CAGcCCCCGUGCAGAGugU- -5'
8147 5' -56.9 NC_001978.2 + 8812 0.66 0.559523
Target:  5'- aGCGcGcCGGUCGGGGGCgaaGCGggggCACu -3'
miRNA:   3'- -CGU-CaGUCAGCCCCCG---UGCaga-GUGu -5'
8147 5' -56.9 NC_001978.2 + 7188 0.66 0.527156
Target:  5'- gGCGGUCAG-CGcGGGCA-GUCUgCAUAc -3'
miRNA:   3'- -CGUCAGUCaGCcCCCGUgCAGA-GUGU- -5'
8147 5' -56.9 NC_001978.2 + 4580 0.66 0.527156
Target:  5'- aCGGUCGuGUCGGGaGGU-CGaUCUCAUAc -3'
miRNA:   3'- cGUCAGU-CAGCCC-CCGuGC-AGAGUGU- -5'
8147 5' -56.9 NC_001978.2 + 4838 0.67 0.505969
Target:  5'- cGCucuUCAGUCGGcGGCGCGaaCUCACc -3'
miRNA:   3'- -CGuc-AGUCAGCCcCCGUGCa-GAGUGu -5'
8147 5' -56.9 NC_001978.2 + 15553 0.67 0.474903
Target:  5'- cGUAGUCGGgcggCaGGGGCgACGUCg-GCAa -3'
miRNA:   3'- -CGUCAGUCa---GcCCCCG-UGCAGagUGU- -5'
8147 5' -56.9 NC_001978.2 + 25114 0.67 0.462745
Target:  5'- gGCAGUCAGcgaagagccggaCGGGGGUua-UCUCGCGc -3'
miRNA:   3'- -CGUCAGUCa-----------GCCCCCGugcAGAGUGU- -5'
8147 5' -56.9 NC_001978.2 + 23191 0.68 0.444819
Target:  5'- cGguGUC-GUCGGc-GUACGUCUCACGc -3'
miRNA:   3'- -CguCAGuCAGCCccCGUGCAGAGUGU- -5'
8147 5' -56.9 NC_001978.2 + 30514 0.68 0.415833
Target:  5'- -aGGUCGGUCGGGGcGCAC-UCaUCGa- -3'
miRNA:   3'- cgUCAGUCAGCCCC-CGUGcAG-AGUgu -5'
8147 5' -56.9 NC_001978.2 + 37865 0.68 0.406431
Target:  5'- --uGUCGG-CGGGGGCGcCGUCccgUACAa -3'
miRNA:   3'- cguCAGUCaGCCCCCGU-GCAGa--GUGU- -5'
8147 5' -56.9 NC_001978.2 + 21476 0.69 0.370192
Target:  5'- gGCAGgcuuccCGGUCGGGGGCuCGaCUC-CGc -3'
miRNA:   3'- -CGUCa-----GUCAGCCCCCGuGCaGAGuGU- -5'
8147 5' -56.9 NC_001978.2 + 32018 0.72 0.235622
Target:  5'- gGCGGagcuUCAGgcugagCGGGGGCGCGUCgUCGg- -3'
miRNA:   3'- -CGUC----AGUCa-----GCCCCCGUGCAG-AGUgu -5'
8147 5' -56.9 NC_001978.2 + 18558 0.75 0.154538
Target:  5'- cGCGcUCAGUCGggcaaggauuccgucGGGGCGCGUCUCcgGCAg -3'
miRNA:   3'- -CGUcAGUCAGC---------------CCCCGUGCAGAG--UGU- -5'
8147 5' -56.9 NC_001978.2 + 37033 1.1 0.000437
Target:  5'- gGCAGUCAGUCGGGGGCACGUCUCACAc -3'
miRNA:   3'- -CGUCAGUCAGCCCCCGUGCAGAGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.