Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8148 | 3' | -63.7 | NC_001978.2 | + | 39850 | 0.68 | 0.193487 |
Target: 5'- -aGGGcguCGGCGCgCUCCGCa-ACAAGGu -3' miRNA: 3'- ugCCCu--GCCGCG-GGGGCGgcUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 37928 | 1.09 | 0.000125 |
Target: 5'- uACGGGACGGCGCCCCCGCCGACAAGGg -3' miRNA: 3'- -UGCCCUGCCGCGGGGGCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 37847 | 0.75 | 0.057777 |
Target: 5'- gUGGGGCGaaGUGCCCCuUGUCGGCGGGGg -3' miRNA: 3'- uGCCCUGC--CGCGGGG-GCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 37606 | 0.68 | 0.193487 |
Target: 5'- cGCGGGcuucccAgGuGCGCCCCCGCuCGACu--- -3' miRNA: 3'- -UGCCC------UgC-CGCGGGGGCG-GCUGuucc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 36735 | 0.76 | 0.050289 |
Target: 5'- cCGGaGACGGCGCCCCagGCCGuuCAGGa -3' miRNA: 3'- uGCC-CUGCCGCGGGGg-CGGCu-GUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 36658 | 0.68 | 0.208846 |
Target: 5'- aGCGGGAagcccUGaGCGCCCCUgaGCCGGuCGcGGa -3' miRNA: 3'- -UGCCCU-----GC-CGCGGGGG--CGGCU-GUuCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 35575 | 0.74 | 0.075498 |
Target: 5'- cCGGaGACGGCGCCCCugagCGUCGGCGcgaccgaagaccccGGGa -3' miRNA: 3'- uGCC-CUGCCGCGGGG----GCGGCUGU--------------UCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 34105 | 0.73 | 0.089688 |
Target: 5'- cACGGGuuacaACGGUGCCCCUuCCGGCGugcccGGGu -3' miRNA: 3'- -UGCCC-----UGCCGCGGGGGcGGCUGU-----UCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 30440 | 0.68 | 0.214195 |
Target: 5'- cGCGGacgccGACGGUuCCCuuGCCGACAc-- -3' miRNA: 3'- -UGCC-----CUGCCGcGGGggCGGCUGUucc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 29852 | 0.73 | 0.087277 |
Target: 5'- -gGGGGCgacccuuccgGGUGCCgacuCCUGCCGACGGGGg -3' miRNA: 3'- ugCCCUG----------CCGCGG----GGGCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 29151 | 0.75 | 0.066341 |
Target: 5'- cACGGGuCGGCGCCUgCCGCuCGACcGGa -3' miRNA: 3'- -UGCCCuGCCGCGGG-GGCG-GCUGuUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 27508 | 0.66 | 0.267768 |
Target: 5'- aGCGGcGGCaGGCGCgUCagcgaacuucaCGCCGACAAGc -3' miRNA: 3'- -UGCC-CUG-CCGCGgGG-----------GCGGCUGUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 24068 | 0.68 | 0.203613 |
Target: 5'- uGCGGGAaucGCGCCCgugCGuCCGACGGGa -3' miRNA: 3'- -UGCCCUgc-CGCGGGg--GC-GGCUGUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 23187 | 0.67 | 0.242724 |
Target: 5'- aGCGGGGCaaGGuCGUUCCCGUcgcgcuCGACAAGu -3' miRNA: 3'- -UGCCCUG--CC-GCGGGGGCG------GCUGUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 22024 | 0.66 | 0.279029 |
Target: 5'- cUGGGGCGGCucGCCgguacacgaagguuCgCGCCGACcuGGg -3' miRNA: 3'- uGCCCUGCCG--CGG--------------GgGCGGCUGuuCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 21121 | 0.67 | 0.251261 |
Target: 5'- gACGGccGACGcgcugaaggugauucGCGCCCagGUCGACAAGGc -3' miRNA: 3'- -UGCC--CUGC---------------CGCGGGggCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 19495 | 0.66 | 0.26068 |
Target: 5'- cGCGGGucACGGUucaggcgcucuucGCgCUCCGCCucagcGGCAAGGa -3' miRNA: 3'- -UGCCC--UGCCG-------------CG-GGGGCGG-----CUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 19410 | 0.66 | 0.273684 |
Target: 5'- uCGGGACGuaGCGCUCcgaugcccgguugCCGCCGcACGccGGGg -3' miRNA: 3'- uGCCCUGC--CGCGGG-------------GGCGGC-UGU--UCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 18458 | 0.67 | 0.23095 |
Target: 5'- cCGGGAagucCGGCuucacgGCCguagcgaCGCCGACAAGGg -3' miRNA: 3'- uGCCCU----GCCG------CGGgg-----GCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 18036 | 0.69 | 0.170085 |
Target: 5'- cCGGucCgGGUGCCCaguggacgaaCGCCGACAAGGc -3' miRNA: 3'- uGCCcuG-CCGCGGGg---------GCGGCUGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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