Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8148 | 3' | -63.7 | NC_001978.2 | + | 9060 | 0.71 | 0.117514 |
Target: 5'- gACGGcGAUaGCGCCaCCCGCa-GCAAGGg -3' miRNA: 3'- -UGCC-CUGcCGCGG-GGGCGgcUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 4449 | 0.72 | 0.099976 |
Target: 5'- cGCaGcGACGGCGCCCCUGCCc-CAGGa -3' miRNA: 3'- -UGcC-CUGCCGCGGGGGCGGcuGUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 1058 | 0.72 | 0.097304 |
Target: 5'- cCGGGuCGuCGCCCCCGCCGAgacucccgcCGAGa -3' miRNA: 3'- uGCCCuGCcGCGGGGGCGGCU---------GUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 29852 | 0.73 | 0.087277 |
Target: 5'- -gGGGGCgacccuuccgGGUGCCgacuCCUGCCGACGGGGg -3' miRNA: 3'- ugCCCUG----------CCGCGG----GGGCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 37606 | 0.68 | 0.193487 |
Target: 5'- cGCGGGcuucccAgGuGCGCCCCCGCuCGACu--- -3' miRNA: 3'- -UGCCC------UgC-CGCGGGGGCG-GCUGuucc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 6100 | 0.68 | 0.200528 |
Target: 5'- aGCGGGAgUGaccgucagaaccuucGCGCCCCgggCGUCGACAAGa -3' miRNA: 3'- -UGCCCU-GC---------------CGCGGGG---GCGGCUGUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 18458 | 0.67 | 0.23095 |
Target: 5'- cCGGGAagucCGGCuucacgGCCguagcgaCGCCGACAAGGg -3' miRNA: 3'- uGCCCU----GCCG------CGGgg-----GCGGCUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 19495 | 0.66 | 0.26068 |
Target: 5'- cGCGGGucACGGUucaggcgcucuucGCgCUCCGCCucagcGGCAAGGa -3' miRNA: 3'- -UGCCC--UGCCG-------------CG-GGGGCGG-----CUGUUCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 16180 | 0.66 | 0.261318 |
Target: 5'- aACGGGAau-CGCCCCgaCGUCGGCAGcGGc -3' miRNA: 3'- -UGCCCUgccGCGGGG--GCGGCUGUU-CC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 27508 | 0.66 | 0.267768 |
Target: 5'- aGCGGcGGCaGGCGCgUCagcgaacuucaCGCCGACAAGc -3' miRNA: 3'- -UGCC-CUG-CCGCGgGG-----------GCGGCUGUUCc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 12908 | 0.66 | 0.267768 |
Target: 5'- cGCGauACGGCcgacGCCaCCCGCCGACGu-- -3' miRNA: 3'- -UGCccUGCCG----CGG-GGGCGGCUGUucc -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 19410 | 0.66 | 0.273684 |
Target: 5'- uCGGGACGuaGCGCUCcgaugcccgguugCCGCCGcACGccGGGg -3' miRNA: 3'- uGCCCUGC--CGCGGG-------------GGCGGC-UGU--UCC- -5' |
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8148 | 3' | -63.7 | NC_001978.2 | + | 37928 | 1.09 | 0.000125 |
Target: 5'- uACGGGACGGCGCCCCCGCCGACAAGGg -3' miRNA: 3'- -UGCCCUGCCGCGGGGGCGGCUGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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