miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8148 5' -57.1 NC_001978.2 + 19399 0.66 0.544128
Target:  5'- cGCUCCgAUGcCCGGUuGCcGCCGCAc-- -3'
miRNA:   3'- -CGGGG-UGCaGGCCAuCG-UGGCGUaau -5'
8148 5' -57.1 NC_001978.2 + 4031 0.66 0.533307
Target:  5'- aGCUCCauACGUuccuUCGG-AGCACCGCGc-- -3'
miRNA:   3'- -CGGGG--UGCA----GGCCaUCGUGGCGUaau -5'
8148 5' -57.1 NC_001978.2 + 28151 0.66 0.522562
Target:  5'- aGCCCCAgCGaCCGGaAG-ACCGcCGUUAg -3'
miRNA:   3'- -CGGGGU-GCaGGCCaUCgUGGC-GUAAU- -5'
8148 5' -57.1 NC_001978.2 + 13257 0.66 0.501334
Target:  5'- cGCUgaaCGCGUCCgGGUGGCACaGCuAUUAc -3'
miRNA:   3'- -CGGg--GUGCAGG-CCAUCGUGgCG-UAAU- -5'
8148 5' -57.1 NC_001978.2 + 715 0.67 0.470232
Target:  5'- -aCCCGCG-CCGuGUA-CGCCGCGUUc -3'
miRNA:   3'- cgGGGUGCaGGC-CAUcGUGGCGUAAu -5'
8148 5' -57.1 NC_001978.2 + 17572 0.67 0.460084
Target:  5'- cGCCCgcaACGUCUgGGUAGCcguaGCCGUAc-- -3'
miRNA:   3'- -CGGGg--UGCAGG-CCAUCG----UGGCGUaau -5'
8148 5' -57.1 NC_001978.2 + 37858 0.67 0.450052
Target:  5'- uGCCCCuuGUCggCGGgGGCGCCGUc--- -3'
miRNA:   3'- -CGGGGugCAG--GCCaUCGUGGCGuaau -5'
8148 5' -57.1 NC_001978.2 + 32545 0.68 0.38343
Target:  5'- cGCCCCAgGUCgucaguCGGUcgagucGGCACCGUg--- -3'
miRNA:   3'- -CGGGGUgCAG------GCCA------UCGUGGCGuaau -5'
8148 5' -57.1 NC_001978.2 + 2688 0.7 0.315742
Target:  5'- cGCCCCggGCGUCUuccuucAGUACCGCGUUAc -3'
miRNA:   3'- -CGGGG--UGCAGGcca---UCGUGGCGUAAU- -5'
8148 5' -57.1 NC_001978.2 + 15941 0.7 0.300294
Target:  5'- aGUCCCAg--CCGGacGCACCGCGUUGg -3'
miRNA:   3'- -CGGGGUgcaGGCCauCGUGGCGUAAU- -5'
8148 5' -57.1 NC_001978.2 + 31384 0.71 0.263563
Target:  5'- cGgCCCAUGgcUCCGGUagcucagcggaagAGCGCCGCAa-- -3'
miRNA:   3'- -CgGGGUGC--AGGCCA-------------UCGUGGCGUaau -5'
8148 5' -57.1 NC_001978.2 + 37894 1.09 0.000426
Target:  5'- cGCCCCACGUCCGGUAGCACCGCAUUAg -3'
miRNA:   3'- -CGGGGUGCAGGCCAUCGUGGCGUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.