miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8149 3' -64 NC_001978.2 + 11700 0.66 0.253678
Target:  5'- --uGCGGCUCGCCCUuccaucgugaucacgGaUGCGgCUUCCc -3'
miRNA:   3'- aguCGCCGAGCGGGG---------------C-ACGC-GAGGGu -5'
8149 3' -64 NC_001978.2 + 26014 0.66 0.251156
Target:  5'- -aAGuCGGCUCGaCCCGUcCGCgaccgugCCCAg -3'
miRNA:   3'- agUC-GCCGAGCgGGGCAcGCGa------GGGU- -5'
8149 3' -64 NC_001978.2 + 12489 0.66 0.251156
Target:  5'- -gGGCGGCagugcugcCGUCuCCGUcgGCGUUCCCGg -3'
miRNA:   3'- agUCGCCGa-------GCGG-GGCA--CGCGAGGGU- -5'
8149 3' -64 NC_001978.2 + 32248 0.66 0.238855
Target:  5'- cUCAGCGGUgcgCGCguccgucgauaCCCGUcCGC-CCCGg -3'
miRNA:   3'- -AGUCGCCGa--GCG-----------GGGCAcGCGaGGGU- -5'
8149 3' -64 NC_001978.2 + 20682 0.67 0.204956
Target:  5'- cUCAGCGGCagcguucuucgUCGUCU--UGCGCUCCg- -3'
miRNA:   3'- -AGUCGCCG-----------AGCGGGgcACGCGAGGgu -5'
8149 3' -64 NC_001978.2 + 28616 0.67 0.199728
Target:  5'- uUCGGCcaacggguuaGGCUcacgCGCCCCGauaCGUUCCCAg -3'
miRNA:   3'- -AGUCG----------CCGA----GCGGGGCac-GCGAGGGU- -5'
8149 3' -64 NC_001978.2 + 38270 0.67 0.199728
Target:  5'- cUCAGCGGa-UGCCCCG-GgGCuucacguuuUCCCAg -3'
miRNA:   3'- -AGUCGCCgaGCGGGGCaCgCG---------AGGGU- -5'
8149 3' -64 NC_001978.2 + 35290 0.67 0.194617
Target:  5'- aCAGCGGCaaccaUgGCgCCCGUGUcCUUCCGg -3'
miRNA:   3'- aGUCGCCG-----AgCG-GGGCACGcGAGGGU- -5'
8149 3' -64 NC_001978.2 + 8230 0.67 0.194617
Target:  5'- cUCAGCGGCUCGCgugCCGUaUGCcgCCgCAa -3'
miRNA:   3'- -AGUCGCCGAGCGg--GGCAcGCGa-GG-GU- -5'
8149 3' -64 NC_001978.2 + 39210 0.68 0.170299
Target:  5'- gUCAGCGuccaugcGCUUacaaaGCCCCGUGaUGCUgCCCGg -3'
miRNA:   3'- -AGUCGC-------CGAG-----CGGGGCAC-GCGA-GGGU- -5'
8149 3' -64 NC_001978.2 + 242 0.68 0.161956
Target:  5'- cUCAGCGGCa-GCgUUG-GCGUUCCCGg -3'
miRNA:   3'- -AGUCGCCGagCGgGGCaCGCGAGGGU- -5'
8149 3' -64 NC_001978.2 + 40438 0.72 0.077596
Target:  5'- gUCAaCGGCUCGCCCCGcUGUGCUgUg- -3'
miRNA:   3'- -AGUcGCCGAGCGGGGC-ACGCGAgGgu -5'
8149 3' -64 NC_001978.2 + 40213 0.74 0.062044
Target:  5'- gUCGGCGGCuUCGCCCaCGUgaucgaagcGCGCUUCUc -3'
miRNA:   3'- -AGUCGCCG-AGCGGG-GCA---------CGCGAGGGu -5'
8149 3' -64 NC_001978.2 + 38198 1.07 0.000122
Target:  5'- gUCAGCGGCUCGCCCCGUGCGCUCCCAc -3'
miRNA:   3'- -AGUCGCCGAGCGGGGCACGCGAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.