miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8149 5' -57.8 NC_001978.2 + 41220 0.66 0.47392
Target:  5'- aUCcGuAAGGCAGUGGGCGcGCaCuGUg -3'
miRNA:   3'- cAGaC-UUCCGUCACCCGCuCG-GuCAg -5'
8149 5' -57.8 NC_001978.2 + 12869 0.66 0.462647
Target:  5'- cGUCUGAcccgacgccccauAGGUguucugAGUcGGGCGcguaauGCCGGUCg -3'
miRNA:   3'- -CAGACU-------------UCCG------UCA-CCCGCu-----CGGUCAG- -5'
8149 5' -57.8 NC_001978.2 + 10500 0.66 0.453529
Target:  5'- -cCUGAucaaGCAuUGGGacaaGAGCCGGUCg -3'
miRNA:   3'- caGACUuc--CGUcACCCg---CUCGGUCAG- -5'
8149 5' -57.8 NC_001978.2 + 15550 0.66 0.423863
Target:  5'- aGUCgGgcGGCAG-GGGCGAcGUCGG-Ca -3'
miRNA:   3'- -CAGaCuuCCGUCaCCCGCU-CGGUCaG- -5'
8149 5' -57.8 NC_001978.2 + 22581 0.67 0.404743
Target:  5'- gGUCUGAcgcaagugaAGGaacUGGGCGAagacguccggGCCAGUCu -3'
miRNA:   3'- -CAGACU---------UCCgucACCCGCU----------CGGUCAG- -5'
8149 5' -57.8 NC_001978.2 + 3555 0.67 0.377107
Target:  5'- uUCUGAGcGGCAa-GGGCGAGCCcGa- -3'
miRNA:   3'- cAGACUU-CCGUcaCCCGCUCGGuCag -5'
8149 5' -57.8 NC_001978.2 + 407 0.67 0.368181
Target:  5'- uGUCUGAGGGUuacaacGGUcAGCCGGUCg -3'
miRNA:   3'- -CAGACUUCCGucac--CCGcUCGGUCAG- -5'
8149 5' -57.8 NC_001978.2 + 26852 0.69 0.309845
Target:  5'- cGUCcGAAGGCgAGUcGGGCaAGCCcauGUCg -3'
miRNA:   3'- -CAGaCUUCCG-UCA-CCCGcUCGGu--CAG- -5'
8149 5' -57.8 NC_001978.2 + 22827 0.7 0.25882
Target:  5'- ---cGAAGGCAGacaGGGCGAGCCcGa- -3'
miRNA:   3'- cagaCUUCCGUCa--CCCGCUCGGuCag -5'
8149 5' -57.8 NC_001978.2 + 2001 0.71 0.232867
Target:  5'- -cCUGggGGCcgaAGcUGGGUGAGaCGGUCg -3'
miRNA:   3'- caGACuuCCG---UC-ACCCGCUCgGUCAG- -5'
8149 5' -57.8 NC_001978.2 + 21799 0.76 0.097813
Target:  5'- -gCUGAAGGCAGUGGGCaacCCGGUg -3'
miRNA:   3'- caGACUUCCGUCACCCGcucGGUCAg -5'
8149 5' -57.8 NC_001978.2 + 38162 1.1 0.00026
Target:  5'- cGUCUGAAGGCAGUGGGCGAGCCAGUCa -3'
miRNA:   3'- -CAGACUUCCGUCACCCGCUCGGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.