Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8153 | 3' | -54 | NC_001978.2 | + | 2152 | 0.67 | 0.60445 |
Target: 5'- uCAGUucguGCGCGGuGCGUCGAcaugguuGC-CGCAu -3' miRNA: 3'- -GUCAu---CGCGUUuCGCAGCU-------CGuGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 38551 | 0.67 | 0.594182 |
Target: 5'- uCAGguucgucgGGCauuucaGCGAAGCGcCGGGCACGUc -3' miRNA: 3'- -GUCa-------UCG------CGUUUCGCaGCUCGUGCGu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 39793 | 0.67 | 0.594182 |
Target: 5'- uCAGUgAGCuugcCGAAGCGUCGGGCG-GCu -3' miRNA: 3'- -GUCA-UCGc---GUUUCGCAGCUCGUgCGu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 26088 | 0.67 | 0.582805 |
Target: 5'- ---cGGCGCcguucAGGUGUCGAGCACuCAg -3' miRNA: 3'- gucaUCGCGu----UUCGCAGCUCGUGcGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 24754 | 0.67 | 0.5794 |
Target: 5'- ---aAGCGCcacacccugagucaGAAGCGUCGGGCGacgGCAu -3' miRNA: 3'- gucaUCGCG--------------UUUCGCAGCUCGUg--CGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 7263 | 0.68 | 0.557946 |
Target: 5'- uCAGaAGCGaaccggcuccGGCGUCGAGUACGUc -3' miRNA: 3'- -GUCaUCGCguu-------UCGCAGCUCGUGCGu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 31617 | 0.68 | 0.548979 |
Target: 5'- -uGUGGgGCAuGGCGagUGAGCACaGCAa -3' miRNA: 3'- guCAUCgCGUuUCGCa-GCUCGUG-CGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 8604 | 0.69 | 0.515788 |
Target: 5'- --aUGGCGCGAAGCaUCGGGgCACGg- -3' miRNA: 3'- gucAUCGCGUUUCGcAGCUC-GUGCgu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 6408 | 0.69 | 0.494116 |
Target: 5'- uCGGgaauGCGCGAcacGUgGUCGAGCACGUAu -3' miRNA: 3'- -GUCau--CGCGUUu--CG-CAGCUCGUGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 18907 | 0.69 | 0.490901 |
Target: 5'- gCAGgcucaGGCGCuccgcAGCGUCGAuagcggggaacgccGCGCGCAc -3' miRNA: 3'- -GUCa----UCGCGuu---UCGCAGCU--------------CGUGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 22339 | 0.69 | 0.483437 |
Target: 5'- cCGGUccGGCGuCGGguugccgucGGCGUCGAGCcauacGCGCAu -3' miRNA: 3'- -GUCA--UCGC-GUU---------UCGCAGCUCG-----UGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 39858 | 0.71 | 0.392939 |
Target: 5'- ---gGGCGUucAGGGCGUCG-GCGCGCu -3' miRNA: 3'- gucaUCGCG--UUUCGCAGCuCGUGCGu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 38878 | 0.71 | 0.365307 |
Target: 5'- ----uGUGCGAcGCGUCGAGC-CGCAu -3' miRNA: 3'- gucauCGCGUUuCGCAGCUCGuGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 27318 | 0.72 | 0.339047 |
Target: 5'- gCGG-AGuCGuCGGcAGCGUCGAGCACGCc -3' miRNA: 3'- -GUCaUC-GC-GUU-UCGCAGCUCGUGCGu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 38438 | 0.73 | 0.306208 |
Target: 5'- uCAGUcGCGCGAGcGCGagaauUCGAGCGCaGCAa -3' miRNA: 3'- -GUCAuCGCGUUU-CGC-----AGCUCGUG-CGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 33112 | 0.74 | 0.268661 |
Target: 5'- gCAGUAGCGCAcGGGCGgcuucgCGGGCuuGCu -3' miRNA: 3'- -GUCAUCGCGU-UUCGCa-----GCUCGugCGu -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 23933 | 0.75 | 0.234917 |
Target: 5'- aCAGUGGCGCcuucacGGCGUCGucagaagcGGUGCGCAu -3' miRNA: 3'- -GUCAUCGCGuu----UCGCAGC--------UCGUGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 30667 | 0.77 | 0.163591 |
Target: 5'- gGGUGGCaaGCucAAGCGcaUCGAGCACGCAc -3' miRNA: 3'- gUCAUCG--CGu-UUCGC--AGCUCGUGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 6238 | 0.77 | 0.154522 |
Target: 5'- ---aAGCGCGGAGUcgucaagaccGUCGAGCGCGCGa -3' miRNA: 3'- gucaUCGCGUUUCG----------CAGCUCGUGCGU- -5' |
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8153 | 3' | -54 | NC_001978.2 | + | 30782 | 0.79 | 0.119118 |
Target: 5'- aCGGcGGCGUgaaggacggcaAGGGCGUCGAGCACGUAc -3' miRNA: 3'- -GUCaUCGCG-----------UUUCGCAGCUCGUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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