miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8154 3' -57.5 NC_001978.2 + 41032 0.66 0.46352
Target:  5'- -gGCUGGGCgcgGCAGCgcuagaagcgaccGCCCGUCAUGAa -3'
miRNA:   3'- caCGACUCG---UGUCG-------------CGGGUGGUACUc -5'
8154 3' -57.5 NC_001978.2 + 32225 0.66 0.454361
Target:  5'- -gGCUGAGCgGCAGCGCgCCAuUCGcGAa -3'
miRNA:   3'- caCGACUCG-UGUCGCG-GGU-GGUaCUc -5'
8154 3' -57.5 NC_001978.2 + 37626 0.66 0.434365
Target:  5'- aUGCgucgguaucGAGUcacACAGCGUCCGCC-UGAGu -3'
miRNA:   3'- cACGa--------CUCG---UGUCGCGGGUGGuACUC- -5'
8154 3' -57.5 NC_001978.2 + 15605 0.67 0.414888
Target:  5'- uUGUUGGGCGgGGCGCUCACgCGUu-- -3'
miRNA:   3'- cACGACUCGUgUCGCGGGUG-GUAcuc -5'
8154 3' -57.5 NC_001978.2 + 26369 0.68 0.377592
Target:  5'- -gGC-GAGCACaAGCGCCgCGCCcAUGGc -3'
miRNA:   3'- caCGaCUCGUG-UCGCGG-GUGG-UACUc -5'
8154 3' -57.5 NC_001978.2 + 8792 0.69 0.326029
Target:  5'- -gGCUGAGCGCAGagacacgaaGCgCGCCGgucgGGGg -3'
miRNA:   3'- caCGACUCGUGUCg--------CGgGUGGUa---CUC- -5'
8154 3' -57.5 NC_001978.2 + 34482 0.69 0.302277
Target:  5'- uUGCUGGGCGgAGCuucaGCCUACCugccuacucacGUGAGu -3'
miRNA:   3'- cACGACUCGUgUCG----CGGGUGG-----------UACUC- -5'
8154 3' -57.5 NC_001978.2 + 19419 0.7 0.252097
Target:  5'- -gGCgGAGCGCgaagAGCGCCUgaACCGUGAc -3'
miRNA:   3'- caCGaCUCGUG----UCGCGGG--UGGUACUc -5'
8154 3' -57.5 NC_001978.2 + 23312 0.72 0.187308
Target:  5'- -aGCUGAGcCACAGCGUCCGCaacgGAc -3'
miRNA:   3'- caCGACUC-GUGUCGCGGGUGgua-CUc -5'
8154 3' -57.5 NC_001978.2 + 36395 0.73 0.154125
Target:  5'- gGUGCUGGGCuugaucguugauGCGGCGUUCAUCAUGGc -3'
miRNA:   3'- -CACGACUCG------------UGUCGCGGGUGGUACUc -5'
8154 3' -57.5 NC_001978.2 + 8277 0.74 0.137643
Target:  5'- -cGCUGAGCcugccuugaugACGGCGCCCuucgcggacGCCGUGAc -3'
miRNA:   3'- caCGACUCG-----------UGUCGCGGG---------UGGUACUc -5'
8154 3' -57.5 NC_001978.2 + 41162 1.08 0.000414
Target:  5'- gGUGCUGAGCACAGCGCCCACCAUGAGu -3'
miRNA:   3'- -CACGACUCGUGUCGCGGGUGGUACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.