miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8155 5' -57.7 NC_001978.2 + 25205 0.67 0.453303
Target:  5'- uGCGCCGG-GCACagcgCGAgauaaccCCCGUcCGGc -3'
miRNA:   3'- cCGCGGCCuCGUGa---GCU-------GGGUAaGCC- -5'
8155 5' -57.7 NC_001978.2 + 22597 0.67 0.451351
Target:  5'- aGGCGUCGGggcgcauggugaccGGCACUCagcgacgcGCCCGguagCGGg -3'
miRNA:   3'- -CCGCGGCC--------------UCGUGAGc-------UGGGUaa--GCC- -5'
8155 5' -57.7 NC_001978.2 + 25700 0.68 0.444558
Target:  5'- cGGCGCCc-AGCGCU--GCCCGUcCGGg -3'
miRNA:   3'- -CCGCGGccUCGUGAgcUGGGUAaGCC- -5'
8155 5' -57.7 NC_001978.2 + 37864 0.68 0.444558
Target:  5'- -aCGCCuGGGCGCcaugcugggUGACCCAUUCGa -3'
miRNA:   3'- ccGCGGcCUCGUGa--------GCUGGGUAAGCc -5'
8155 5' -57.7 NC_001978.2 + 10008 0.68 0.444558
Target:  5'- cGUGUCGGAGCACaguaCGACCUucaaGGu -3'
miRNA:   3'- cCGCGGCCUCGUGa---GCUGGGuaagCC- -5'
8155 5' -57.7 NC_001978.2 + 28298 0.68 0.434953
Target:  5'- cGCGCCGGGcucGCGCUUGAUCUugaguacgUCGa -3'
miRNA:   3'- cCGCGGCCU---CGUGAGCUGGGua------AGCc -5'
8155 5' -57.7 NC_001978.2 + 6726 0.68 0.416111
Target:  5'- cGCGCCGGAGCGCauaGCCa---CGGg -3'
miRNA:   3'- cCGCGGCCUCGUGagcUGGguaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 19346 0.68 0.416111
Target:  5'- gGGCaUCGGAGCGCUaCGuCCCGa-CGGa -3'
miRNA:   3'- -CCGcGGCCUCGUGA-GCuGGGUaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 9025 0.68 0.416111
Target:  5'- uGGCGCCGGuaucgcugaGGCGCUUGAgCgGgaagcCGGg -3'
miRNA:   3'- -CCGCGGCC---------UCGUGAGCUgGgUaa---GCC- -5'
8155 5' -57.7 NC_001978.2 + 5171 0.68 0.406879
Target:  5'- aGCGCCGGAGC-C-CGaACCCugaaggcCGGa -3'
miRNA:   3'- cCGCGGCCUCGuGaGC-UGGGuaa----GCC- -5'
8155 5' -57.7 NC_001978.2 + 40660 0.68 0.406879
Target:  5'- cGGCcugaGUgGGuAGCGCUCGACgCCGUUCc- -3'
miRNA:   3'- -CCG----CGgCC-UCGUGAGCUG-GGUAAGcc -5'
8155 5' -57.7 NC_001978.2 + 11001 0.68 0.406879
Target:  5'- uGGUucgGCCGGAcCG-UCGAgCCGUUCGGa -3'
miRNA:   3'- -CCG---CGGCCUcGUgAGCUgGGUAAGCC- -5'
8155 5' -57.7 NC_001978.2 + 28462 0.69 0.379969
Target:  5'- gGGCGCCGGAGUugacggAgUCGACaccccaCAUggcagCGGc -3'
miRNA:   3'- -CCGCGGCCUCG------UgAGCUGg-----GUAa----GCC- -5'
8155 5' -57.7 NC_001978.2 + 17839 0.69 0.371267
Target:  5'- cGGCGUCGGAccaAUUCGGCCC---CGGa -3'
miRNA:   3'- -CCGCGGCCUcg-UGAGCUGGGuaaGCC- -5'
8155 5' -57.7 NC_001978.2 + 36641 0.69 0.353441
Target:  5'- aGCGCCGGAgcgaucaaguGCACUgccacgcCGACCCAgUCa- -3'
miRNA:   3'- cCGCGGCCU----------CGUGA-------GCUGGGUaAGcc -5'
8155 5' -57.7 NC_001978.2 + 27065 0.7 0.345989
Target:  5'- cGCGCCGGAagaGCGCgacuaCGACCUugacCGGa -3'
miRNA:   3'- cCGCGGCCU---CGUGa----GCUGGGuaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 17690 0.7 0.345989
Target:  5'- cGGCuaCGGGGCACguggCGcccaggucACCCAggUCGGu -3'
miRNA:   3'- -CCGcgGCCUCGUGa---GC--------UGGGUa-AGCC- -5'
8155 5' -57.7 NC_001978.2 + 37921 0.7 0.337841
Target:  5'- cGGCGCCcccgccgacaaGGGGCACuUCGcCCCAcgucCGGu -3'
miRNA:   3'- -CCGCGG-----------CCUCGUG-AGCuGGGUaa--GCC- -5'
8155 5' -57.7 NC_001978.2 + 38184 0.71 0.277727
Target:  5'- cGUGCCGGAGCAaUCG-CCCugggUGGg -3'
miRNA:   3'- cCGCGGCCUCGUgAGCuGGGuaa-GCC- -5'
8155 5' -57.7 NC_001978.2 + 857 0.71 0.270843
Target:  5'- cGGCGCCuGGGCGCgCGACUgGgcaCGGg -3'
miRNA:   3'- -CCGCGGcCUCGUGaGCUGGgUaa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.