miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8156 3' -58.4 NC_001978.2 + 1853 1.08 0.000342
Target:  5'- gACGCUGGGCAGUGCCGCCCGUAAUCAg -3'
miRNA:   3'- -UGCGACCCGUCACGGCGGGCAUUAGU- -5'
8156 3' -58.4 NC_001978.2 + 2970 0.75 0.104017
Target:  5'- aGCGCUGGGgAGUGCCcccGCCCGaagAGUgCAg -3'
miRNA:   3'- -UGCGACCCgUCACGG---CGGGCa--UUA-GU- -5'
8156 3' -58.4 NC_001978.2 + 9111 0.66 0.420032
Target:  5'- aGCGcCUGGGUGaaGCCGCCgGUGAa-- -3'
miRNA:   3'- -UGC-GACCCGUcaCGGCGGgCAUUagu -5'
8156 3' -58.4 NC_001978.2 + 13921 0.67 0.365205
Target:  5'- uCGCUGGGCuugaaGgCGCCCGgauacagGGUCAg -3'
miRNA:   3'- uGCGACCCGuca--CgGCGGGCa------UUAGU- -5'
8156 3' -58.4 NC_001978.2 + 14399 0.66 0.429644
Target:  5'- cGCGCUGGGCacGGUuuaCGUCCGUuggcuUCAu -3'
miRNA:   3'- -UGCGACCCG--UCAcg-GCGGGCAuu---AGU- -5'
8156 3' -58.4 NC_001978.2 + 16661 0.67 0.389259
Target:  5'- -gGCUGGGCAGgaaaccggcgcgcuUGCCGCUaugcGGUCAa -3'
miRNA:   3'- ugCGACCCGUC--------------ACGGCGGgca-UUAGU- -5'
8156 3' -58.4 NC_001978.2 + 18364 0.66 0.439384
Target:  5'- gGCGCgUGcGUAGuUGCCGCCCGgcuugcugUGGUCGc -3'
miRNA:   3'- -UGCG-ACcCGUC-ACGGCGGGC--------AUUAGU- -5'
8156 3' -58.4 NC_001978.2 + 22837 0.71 0.214116
Target:  5'- cGCGCUGGGCuucauUGaCUGCCUGUAcgCGg -3'
miRNA:   3'- -UGCGACCCGuc---AC-GGCGGGCAUuaGU- -5'
8156 3' -58.4 NC_001978.2 + 40185 0.69 0.284611
Target:  5'- cGCGCuucucgaUGGGCGuucccUGCCcccuGCCCGUAGUCGa -3'
miRNA:   3'- -UGCG-------ACCCGUc----ACGG----CGGGCAUUAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.