miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8156 5' -55.7 NC_001978.2 + 20760 0.66 0.660754
Target:  5'- --cGcgCGU-UCGACGGuCCGGACCg- -3'
miRNA:   3'- gaaCuaGUAgAGCUGCC-GGCCUGGgc -5'
8156 5' -55.7 NC_001978.2 + 1750 0.66 0.649693
Target:  5'- --gGGUCGUgUCGGCGgacGCCGGACg-- -3'
miRNA:   3'- gaaCUAGUAgAGCUGC---CGGCCUGggc -5'
8156 5' -55.7 NC_001978.2 + 32714 0.66 0.638615
Target:  5'- --aGggCGUCagCGucaguCGGCCGGuCCCGg -3'
miRNA:   3'- gaaCuaGUAGa-GCu----GCCGGCCuGGGC- -5'
8156 5' -55.7 NC_001978.2 + 39437 0.66 0.634181
Target:  5'- -aUGAUCGguccgcaaucaagCUCGAcCGGCCGGAgCg- -3'
miRNA:   3'- gaACUAGUa------------GAGCU-GCCGGCCUgGgc -5'
8156 5' -55.7 NC_001978.2 + 5024 0.66 0.627531
Target:  5'- --cGGUCGccgacUUUGACGGCCGGAUCa- -3'
miRNA:   3'- gaaCUAGUa----GAGCUGCCGGCCUGGgc -5'
8156 5' -55.7 NC_001978.2 + 13806 0.67 0.594343
Target:  5'- -----cCAUagCGACGGCCGGAgCCGc -3'
miRNA:   3'- gaacuaGUAgaGCUGCCGGCCUgGGC- -5'
8156 5' -55.7 NC_001978.2 + 11709 0.67 0.583332
Target:  5'- --gGGUCGUC-CGGC-GCCGGuCCCu -3'
miRNA:   3'- gaaCUAGUAGaGCUGcCGGCCuGGGc -5'
8156 5' -55.7 NC_001978.2 + 25538 0.68 0.506809
Target:  5'- -aUGGUCGUUccgcugaagggauUCGACGGC-GuGACCCGu -3'
miRNA:   3'- gaACUAGUAG-------------AGCUGCCGgC-CUGGGC- -5'
8156 5' -55.7 NC_001978.2 + 33940 0.69 0.436829
Target:  5'- --gGGUCGUCgUCGgcguacacgcgcACGGUCGGcACCCGg -3'
miRNA:   3'- gaaCUAGUAG-AGC------------UGCCGGCC-UGGGC- -5'
8156 5' -55.7 NC_001978.2 + 7186 0.7 0.408178
Target:  5'- aUUGA-CGUaCUCGAC-GCCGGAgCCGg -3'
miRNA:   3'- gAACUaGUA-GAGCUGcCGGCCUgGGC- -5'
8156 5' -55.7 NC_001978.2 + 17850 0.7 0.408178
Target:  5'- gUUGGUCGUgUCGGC-GUCGGACCa- -3'
miRNA:   3'- gAACUAGUAgAGCUGcCGGCCUGGgc -5'
8156 5' -55.7 NC_001978.2 + 5607 0.71 0.354544
Target:  5'- -aUGG-CGUCacCGAUGGCCGGACCgGc -3'
miRNA:   3'- gaACUaGUAGa-GCUGCCGGCCUGGgC- -5'
8156 5' -55.7 NC_001978.2 + 1888 1.09 0.000736
Target:  5'- uCUUGAUCAUCUCGACGGCCGGACCCGa -3'
miRNA:   3'- -GAACUAGUAGAGCUGCCGGCCUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.