Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8156 | 5' | -55.7 | NC_001978.2 | + | 20760 | 0.66 | 0.660754 |
Target: 5'- --cGcgCGU-UCGACGGuCCGGACCg- -3' miRNA: 3'- gaaCuaGUAgAGCUGCC-GGCCUGGgc -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 1750 | 0.66 | 0.649693 |
Target: 5'- --gGGUCGUgUCGGCGgacGCCGGACg-- -3' miRNA: 3'- gaaCUAGUAgAGCUGC---CGGCCUGggc -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 32714 | 0.66 | 0.638615 |
Target: 5'- --aGggCGUCagCGucaguCGGCCGGuCCCGg -3' miRNA: 3'- gaaCuaGUAGa-GCu----GCCGGCCuGGGC- -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 39437 | 0.66 | 0.634181 |
Target: 5'- -aUGAUCGguccgcaaucaagCUCGAcCGGCCGGAgCg- -3' miRNA: 3'- gaACUAGUa------------GAGCU-GCCGGCCUgGgc -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 5024 | 0.66 | 0.627531 |
Target: 5'- --cGGUCGccgacUUUGACGGCCGGAUCa- -3' miRNA: 3'- gaaCUAGUa----GAGCUGCCGGCCUGGgc -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 13806 | 0.67 | 0.594343 |
Target: 5'- -----cCAUagCGACGGCCGGAgCCGc -3' miRNA: 3'- gaacuaGUAgaGCUGCCGGCCUgGGC- -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 11709 | 0.67 | 0.583332 |
Target: 5'- --gGGUCGUC-CGGC-GCCGGuCCCu -3' miRNA: 3'- gaaCUAGUAGaGCUGcCGGCCuGGGc -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 25538 | 0.68 | 0.506809 |
Target: 5'- -aUGGUCGUUccgcugaagggauUCGACGGC-GuGACCCGu -3' miRNA: 3'- gaACUAGUAG-------------AGCUGCCGgC-CUGGGC- -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 33940 | 0.69 | 0.436829 |
Target: 5'- --gGGUCGUCgUCGgcguacacgcgcACGGUCGGcACCCGg -3' miRNA: 3'- gaaCUAGUAG-AGC------------UGCCGGCC-UGGGC- -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 7186 | 0.7 | 0.408178 |
Target: 5'- aUUGA-CGUaCUCGAC-GCCGGAgCCGg -3' miRNA: 3'- gAACUaGUA-GAGCUGcCGGCCUgGGC- -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 17850 | 0.7 | 0.408178 |
Target: 5'- gUUGGUCGUgUCGGC-GUCGGACCa- -3' miRNA: 3'- gAACUAGUAgAGCUGcCGGCCUGGgc -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 5607 | 0.71 | 0.354544 |
Target: 5'- -aUGG-CGUCacCGAUGGCCGGACCgGc -3' miRNA: 3'- gaACUaGUAGa-GCUGCCGGCCUGGgC- -5' |
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8156 | 5' | -55.7 | NC_001978.2 | + | 1888 | 1.09 | 0.000736 |
Target: 5'- uCUUGAUCAUCUCGACGGCCGGACCCGa -3' miRNA: 3'- -GAACUAGUAGAGCUGCCGGCCUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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