Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8157 | 3' | -55.2 | NC_001978.2 | + | 5223 | 1.09 | 0.000773 |
Target: 5'- cGGCACGAAGGCCGGUAACCCGAACGUu -3' miRNA: 3'- -CCGUGCUUCCGGCCAUUGGGCUUGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 25576 | 0.67 | 0.591911 |
Target: 5'- uGGCGCccaGGGGC--GUGACCUGAGCGg -3' miRNA: 3'- -CCGUGc--UUCCGgcCAUUGGGCUUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 19424 | 0.67 | 0.603001 |
Target: 5'- aGCGCGAAGagcGCCugaaccGUGACCCGcGCGg -3' miRNA: 3'- cCGUGCUUC---CGGc-----CAUUGGGCuUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 37503 | 0.67 | 0.613005 |
Target: 5'- cGCAUGAAgcuugugaccgauGGCCGGUuugAAgUCGAGCGg -3' miRNA: 3'- cCGUGCUU-------------CCGGCCA---UUgGGCUUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 11257 | 0.67 | 0.614117 |
Target: 5'- gGGCuuu-GGGCCGGacgggacuACCUGAACGg -3' miRNA: 3'- -CCGugcuUCCGGCCau------UGGGCUUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 35984 | 0.67 | 0.62525 |
Target: 5'- gGGCGacacccCGGAGacuGCCGccGACCCGGGCGUu -3' miRNA: 3'- -CCGU------GCUUC---CGGCcaUUGGGCUUGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 40280 | 0.66 | 0.657532 |
Target: 5'- gGGCAgCGGGaagggucGGCCGGUccCCCGGuCGg -3' miRNA: 3'- -CCGU-GCUU-------CCGGCCAuuGGGCUuGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 9019 | 0.66 | 0.669739 |
Target: 5'- cGGCAUu-GGcGCCGGUAucgcugaggcGCuuGAGCGg -3' miRNA: 3'- -CCGUGcuUC-CGGCCAU----------UGggCUUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 27227 | 0.66 | 0.680797 |
Target: 5'- uGCGCuc--GCCGGUuucuuCCCGGGCGUg -3' miRNA: 3'- cCGUGcuucCGGCCAuu---GGGCUUGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 2006 | 0.67 | 0.569842 |
Target: 5'- gGGC-CGAagcuGGGUgagaCGGUcgaccaccuuGACCCGGACGUg -3' miRNA: 3'- -CCGuGCU----UCCG----GCCA----------UUGGGCUUGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 12836 | 0.68 | 0.558881 |
Target: 5'- aGCACGucGGCgGGUGGCgUCGGcCGUa -3' miRNA: 3'- cCGUGCuuCCGgCCAUUG-GGCUuGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 33493 | 0.75 | 0.222184 |
Target: 5'- cGCGCGAAGGUgCGGUaugcgGACCCGGAgGa -3' miRNA: 3'- cCGUGCUUCCG-GCCA-----UUGGGCUUgCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 16415 | 0.71 | 0.368969 |
Target: 5'- gGGCuuCGAAgcguGGUCGGUcuACCCGGGCGg -3' miRNA: 3'- -CCGu-GCUU----CCGGCCAu-UGGGCUUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 4105 | 0.71 | 0.376944 |
Target: 5'- gGGCgaagucgGCGAAGaGCCGG-AGCCUGAGCc- -3' miRNA: 3'- -CCG-------UGCUUC-CGGCCaUUGGGCUUGca -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 11025 | 0.71 | 0.377837 |
Target: 5'- gGGCGCGAAGucGCCuGGgcGCUgCGGACGUc -3' miRNA: 3'- -CCGUGCUUC--CGG-CCauUGG-GCUUGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 17111 | 0.7 | 0.433964 |
Target: 5'- cGGCuaucACGAAGGCCGGU----CGGGCGg -3' miRNA: 3'- -CCG----UGCUUCCGGCCAuuggGCUUGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 25345 | 0.7 | 0.44378 |
Target: 5'- uGGCGC----GCCGGUAACCCGAcuucgcAUGUg -3' miRNA: 3'- -CCGUGcuucCGGCCAUUGGGCU------UGCA- -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 36257 | 0.69 | 0.463781 |
Target: 5'- gGGCACGAAGGCgauuGUGcgaACCCGG-CGg -3' miRNA: 3'- -CCGUGCUUCCGgc--CAU---UGGGCUuGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 14807 | 0.69 | 0.505128 |
Target: 5'- cGGCAUGAAGGuUCGG-GACgCCGAcauuACGg -3' miRNA: 3'- -CCGUGCUUCC-GGCCaUUG-GGCU----UGCa -5' |
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8157 | 3' | -55.2 | NC_001978.2 | + | 5184 | 0.69 | 0.494635 |
Target: 5'- cGGCggaACGcuGAGcGCCGG-AGCCCGAACc- -3' miRNA: 3'- -CCG---UGC--UUC-CGGCCaUUGGGCUUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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