Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 5406 | 1.13 | 0.000416 |
Target: 5'- gGCCGAGAUUCCUGAGAGCUACCCGGCc -3' miRNA: 3'- -CGGCUCUAAGGACUCUCGAUGGGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 29416 | 0.66 | 0.667667 |
Target: 5'- gGCCGG---UCCUGGGGGUcGCUguaUGGCg -3' miRNA: 3'- -CGGCUcuaAGGACUCUCGaUGG---GCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 987 | 0.66 | 0.667667 |
Target: 5'- cGgCGGGAgUCUggcGGGGGCgacgACCCGGa -3' miRNA: 3'- -CgGCUCUaAGGa--CUCUCGa---UGGGCCg -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 33160 | 0.66 | 0.656511 |
Target: 5'- cGCUGAGAUUC--GGGAGUU-CgCCGGUc -3' miRNA: 3'- -CGGCUCUAAGgaCUCUCGAuG-GGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 16115 | 0.67 | 0.609526 |
Target: 5'- uGCCGAcgucggggcGAUUCCcguugccgacaaGGGAGUUGCguCCGGCg -3' miRNA: 3'- -CGGCU---------CUAAGGa-----------CUCUCGAUG--GGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 30296 | 0.67 | 0.600595 |
Target: 5'- cGCCGAGGgcgaCgUGuacGaAGCcGCCCGGCu -3' miRNA: 3'- -CGGCUCUaa--GgACu--C-UCGaUGGGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 15994 | 0.67 | 0.600595 |
Target: 5'- gGCCgGAGggUCCgGAGGGU---CCGGCc -3' miRNA: 3'- -CGG-CUCuaAGGaCUCUCGaugGGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 2561 | 0.67 | 0.577246 |
Target: 5'- uGCCGuGAcggUCgaCUGAGccacgacGGCaACCCGGCg -3' miRNA: 3'- -CGGCuCUa--AG--GACUC-------UCGaUGGGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 17633 | 0.67 | 0.556297 |
Target: 5'- cGCUGAGccgUCC--GGAGCcgucGCCCGGUa -3' miRNA: 3'- -CGGCUCua-AGGacUCUCGa---UGGGCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 1328 | 0.71 | 0.38394 |
Target: 5'- cGCUGAcgcgacGGUUCCcagUGAGGGUUACCgGGUc -3' miRNA: 3'- -CGGCU------CUAAGG---ACUCUCGAUGGgCCG- -5' |
|||||||
8158 | 5' | -55.2 | NC_001978.2 | + | 17938 | 0.66 | 0.645332 |
Target: 5'- uGCCGAGAagCUUcGucAGCgacccuucGCCCGGCa -3' miRNA: 3'- -CGGCUCUaaGGA-CucUCGa-------UGGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home