miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8159 5' -54.3 NC_001978.2 + 17826 0.66 0.687192
Target:  5'- --cGGUCGUUGGGcuacuccggcaaGGACGcugACGGCGu -3'
miRNA:   3'- guuCCAGCAACUCug----------CCUGC---UGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 15281 0.66 0.680522
Target:  5'- --cGGUCGUcugcacgcucgaUGAGACGGggcagaucauugACGccaACGGCAa -3'
miRNA:   3'- guuCCAGCA------------ACUCUGCC------------UGC---UGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 112 0.67 0.669367
Target:  5'- -cGGGUCGUUGGccuGGgGGGCGccuggguccgGCGGCu -3'
miRNA:   3'- guUCCAGCAACU---CUgCCUGC----------UGCCGu -5'
8159 5' -54.3 NC_001978.2 + 20333 0.67 0.64696
Target:  5'- gCAGGGUCGUgaUGAugcccucaGCGGcuuCGGCGGCu -3'
miRNA:   3'- -GUUCCAGCA--ACUc-------UGCCu--GCUGCCGu -5'
8159 5' -54.3 NC_001978.2 + 40246 0.67 0.63573
Target:  5'- -uAGG-CGcUGAGACGGGCGcACaGCGg -3'
miRNA:   3'- guUCCaGCaACUCUGCCUGC-UGcCGU- -5'
8159 5' -54.3 NC_001978.2 + 9979 0.69 0.535681
Target:  5'- --cGGUCGacuaUGGcGACGGuCGGCGGCu -3'
miRNA:   3'- guuCCAGCa---ACU-CUGCCuGCUGCCGu -5'
8159 5' -54.3 NC_001978.2 + 25834 0.69 0.503426
Target:  5'- uCAGGGUUGUUGAccaGAgacgcacccCGGACGgcaACGGCGu -3'
miRNA:   3'- -GUUCCAGCAACU---CU---------GCCUGC---UGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 35823 0.7 0.472043
Target:  5'- gCGGGaGUgGUcGAGcUGGGCGACGGCGu -3'
miRNA:   3'- -GUUC-CAgCAaCUCuGCCUGCUGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 9798 0.71 0.422064
Target:  5'- --cGGcCGUUGAGACgcugggcaaGGuCGACGGCGc -3'
miRNA:   3'- guuCCaGCAACUCUG---------CCuGCUGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 12159 0.71 0.393647
Target:  5'- uCGGGGgcaCGgcugGGGGCGGcACGugGGCAu -3'
miRNA:   3'- -GUUCCa--GCaa--CUCUGCC-UGCugCCGU- -5'
8159 5' -54.3 NC_001978.2 + 12879 0.72 0.375405
Target:  5'- -cGGGcUCGaUUGAGuACGGguGCGACGGCGu -3'
miRNA:   3'- guUCC-AGC-AACUC-UGCC--UGCUGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 1749 0.74 0.257468
Target:  5'- -cGGGUCGUgucGGCGGACGccggACGGCAa -3'
miRNA:   3'- guUCCAGCAacuCUGCCUGC----UGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 30018 0.76 0.219523
Target:  5'- gCAAGGUCGUc--GGCGGACugGGCGGCGc -3'
miRNA:   3'- -GUUCCAGCAacuCUGCCUG--CUGCCGU- -5'
8159 5' -54.3 NC_001978.2 + 5846 1.08 0.001113
Target:  5'- gCAAGGUCGUUGAGACGGACGACGGCAu -3'
miRNA:   3'- -GUUCCAGCAACUCUGCCUGCUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.