miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8160 3' -55.5 NC_001978.2 + 32028 0.66 0.664299
Target:  5'- cAGgcugAgCGGGggCGCgUCGUCGGcUUCGu -3'
miRNA:   3'- -UCa---UgGCCCaaGCGaAGCGGCC-AAGC- -5'
8160 3' -55.5 NC_001978.2 + 4082 0.66 0.664299
Target:  5'- aAGUACCGGGUgcCGCUgaacCUGGgcgaagUCGg -3'
miRNA:   3'- -UCAUGGCCCAa-GCGAagc-GGCCa-----AGC- -5'
8160 3' -55.5 NC_001978.2 + 23586 0.66 0.652103
Target:  5'- -uUGCCGGGUUCGgcgcgucguacucCUUCGCCGc---- -3'
miRNA:   3'- ucAUGGCCCAAGC-------------GAAGCGGCcaagc -5'
8160 3' -55.5 NC_001978.2 + 34720 0.66 0.638774
Target:  5'- cGUGCCGGGUgcaacggggcucagUCGg--CGUCGGcUCGa -3'
miRNA:   3'- uCAUGGCCCA--------------AGCgaaGCGGCCaAGC- -5'
8160 3' -55.5 NC_001978.2 + 3438 0.67 0.597696
Target:  5'- -cUGCCGGGUga-CUUCGUCGGgugcUCGc -3'
miRNA:   3'- ucAUGGCCCAagcGAAGCGGCCa---AGC- -5'
8160 3' -55.5 NC_001978.2 + 13546 0.67 0.564665
Target:  5'- cGGUaACCGGGU--GCUgaaguacaCGCCcGGUUCGg -3'
miRNA:   3'- -UCA-UGGCCCAagCGAa-------GCGG-CCAAGC- -5'
8160 3' -55.5 NC_001978.2 + 34132 0.68 0.542909
Target:  5'- cGUGcCCGGGUgUGCgucCGCCGGagCGu -3'
miRNA:   3'- uCAU-GGCCCAaGCGaa-GCGGCCaaGC- -5'
8160 3' -55.5 NC_001978.2 + 1395 0.68 0.521435
Target:  5'- ----aCGGGUUCGU-UCGCCGG-UCa -3'
miRNA:   3'- ucaugGCCCAAGCGaAGCGGCCaAGc -5'
8160 3' -55.5 NC_001978.2 + 11714 0.68 0.510822
Target:  5'- -uUACCGGG-UCGUccggCGCCGGUcccugcccuUCGa -3'
miRNA:   3'- ucAUGGCCCaAGCGaa--GCGGCCA---------AGC- -5'
8160 3' -55.5 NC_001978.2 + 36327 0.69 0.449249
Target:  5'- --cGCCGGGUUCGCacaaUCGCC--UUCGu -3'
miRNA:   3'- ucaUGGCCCAAGCGa---AGCGGccAAGC- -5'
8160 3' -55.5 NC_001978.2 + 22683 0.71 0.373993
Target:  5'- -cUACCGGGcgcgUCGCUgagUGCCGG-UCa -3'
miRNA:   3'- ucAUGGCCCa---AGCGAa--GCGGCCaAGc -5'
8160 3' -55.5 NC_001978.2 + 32792 0.75 0.214116
Target:  5'- aGGUAacCCGGGUUCGaagccgUCGCCGGaUUCu -3'
miRNA:   3'- -UCAU--GGCCCAAGCga----AGCGGCC-AAGc -5'
8160 3' -55.5 NC_001978.2 + 27207 0.75 0.206234
Target:  5'- gAGUACCGGGcgacguccgaugCGC-UCGCCGGUUUc -3'
miRNA:   3'- -UCAUGGCCCaa----------GCGaAGCGGCCAAGc -5'
8160 3' -55.5 NC_001978.2 + 5908 1.08 0.0009
Target:  5'- aAGUACCGGGUUCGCUUCGCCGGUUCGc -3'
miRNA:   3'- -UCAUGGCCCAAGCGAAGCGGCCAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.