miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8160 5' -50.7 NC_001978.2 + 36878 0.66 0.898762
Target:  5'- -gCGUUCGGcaGACGCGccGgaacgucgucgUCGGCa -3'
miRNA:   3'- ugGCAAGCCaaCUGCGCuuCa----------AGUCG- -5'
8160 5' -50.7 NC_001978.2 + 2988 0.66 0.870783
Target:  5'- cGCCGUUCGGcuuccggcgagacggUcacuccgcaUGACGCGcuucAGGUgUCGGCa -3'
miRNA:   3'- -UGGCAAGCC---------------A---------ACUGCGC----UUCA-AGUCG- -5'
8160 5' -50.7 NC_001978.2 + 17717 0.66 0.867451
Target:  5'- cACCcaggUCGGUaaggcgcuUGuCGCGAAGggcuUCGGCg -3'
miRNA:   3'- -UGGca--AGCCA--------ACuGCGCUUCa---AGUCG- -5'
8160 5' -50.7 NC_001978.2 + 20228 0.67 0.858936
Target:  5'- gGCCGagaCGGUUGAggcCGUGAAGga-AGCc -3'
miRNA:   3'- -UGGCaa-GCCAACU---GCGCUUCaagUCG- -5'
8160 5' -50.7 NC_001978.2 + 26035 0.67 0.850162
Target:  5'- gACCGUgcccaGGUUGAgGCGGAGcaccguaaGGCc -3'
miRNA:   3'- -UGGCAag---CCAACUgCGCUUCaag-----UCG- -5'
8160 5' -50.7 NC_001978.2 + 25226 0.67 0.850162
Target:  5'- uGCCGUgcCGGUugUGACacggGCGAcGUcgUCAGCu -3'
miRNA:   3'- -UGGCAa-GCCA--ACUG----CGCUuCA--AGUCG- -5'
8160 5' -50.7 NC_001978.2 + 35578 0.7 0.706181
Target:  5'- uGCCGUcuccggcgcgUUGGggGACGUGAAGgcgAGCg -3'
miRNA:   3'- -UGGCA----------AGCCaaCUGCGCUUCaagUCG- -5'
8160 5' -50.7 NC_001978.2 + 9559 0.7 0.694882
Target:  5'- uAUCGUUCGcGcgggUGGCGaCGAAGUgaacgCGGCg -3'
miRNA:   3'- -UGGCAAGC-Ca---ACUGC-GCUUCAa----GUCG- -5'
8160 5' -50.7 NC_001978.2 + 25525 0.7 0.683516
Target:  5'- uGCCG-UCGGggGAguaGCGAAGcccCAGCg -3'
miRNA:   3'- -UGGCaAGCCaaCUg--CGCUUCaa-GUCG- -5'
8160 5' -50.7 NC_001978.2 + 28051 0.7 0.683516
Target:  5'- cGCCGUccUGGggcUGACGCG-GGUcaaUCAGCg -3'
miRNA:   3'- -UGGCAa-GCCa--ACUGCGCuUCA---AGUCG- -5'
8160 5' -50.7 NC_001978.2 + 18082 0.71 0.614619
Target:  5'- gACCGgacCGGU--ACGCGGAGcacccUUCAGCg -3'
miRNA:   3'- -UGGCaa-GCCAacUGCGCUUC-----AAGUCG- -5'
8160 5' -50.7 NC_001978.2 + 11012 0.71 0.614619
Target:  5'- cCCGUUCGcGauugGGCGCGAAGUcgccUgGGCg -3'
miRNA:   3'- uGGCAAGC-Caa--CUGCGCUUCA----AgUCG- -5'
8160 5' -50.7 NC_001978.2 + 33243 0.71 0.61117
Target:  5'- cGCCGUUCGGgagUGAUGgcaagugagcuguaCGGAGUgcaAGCg -3'
miRNA:   3'- -UGGCAAGCCa--ACUGC--------------GCUUCAag-UCG- -5'
8160 5' -50.7 NC_001978.2 + 14244 0.71 0.591667
Target:  5'- gACCG---GGUUGAgGCGAAGUUCAu- -3'
miRNA:   3'- -UGGCaagCCAACUgCGCUUCAAGUcg -5'
8160 5' -50.7 NC_001978.2 + 14438 0.74 0.438937
Target:  5'- cCCGUUCGGcuggGACGCuGAGgaCGGCg -3'
miRNA:   3'- uGGCAAGCCaa--CUGCGcUUCaaGUCG- -5'
8160 5' -50.7 NC_001978.2 + 11219 0.75 0.380588
Target:  5'- -aCGUUCGGUcgucugaucUGACGUu-GGUUCAGCg -3'
miRNA:   3'- ugGCAAGCCA---------ACUGCGcuUCAAGUCG- -5'
8160 5' -50.7 NC_001978.2 + 32416 0.77 0.319381
Target:  5'- aGCCGUUCGGcgGACGC----UUCAGCg -3'
miRNA:   3'- -UGGCAAGCCaaCUGCGcuucAAGUCG- -5'
8160 5' -50.7 NC_001978.2 + 5944 1.13 0.001176
Target:  5'- gACCGUUCGGUUGACGCGAAGUUCAGCa -3'
miRNA:   3'- -UGGCAAGCCAACUGCGCUUCAAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.