miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 5' -58 NC_001978.2 + 18918 0.67 0.459527
Target:  5'- -gACGACGaCGGGCAGgcucaggcgcUCCGcagcGUCGAUa -3'
miRNA:   3'- agUGCUGCgGCCCGUU----------AGGC----CAGCUG- -5'
8161 5' -58 NC_001978.2 + 3541 0.67 0.44969
Target:  5'- gCGCcAUGCCGGGCGcUgUGGUUGAg -3'
miRNA:   3'- aGUGcUGCGGCCCGUuAgGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 17393 0.67 0.44969
Target:  5'- gUACGACGCUGacuauGCGuacaCGGUCGGCg -3'
miRNA:   3'- aGUGCUGCGGCc----CGUuag-GCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 28465 0.67 0.439969
Target:  5'- cCugGGCGCCGGaGUuga-CGGagUCGACa -3'
miRNA:   3'- aGugCUGCGGCC-CGuuagGCC--AGCUG- -5'
8161 5' -58 NC_001978.2 + 2094 0.67 0.439969
Target:  5'- cCAC-ACGuCCGGGuCAAggUGGUCGACc -3'
miRNA:   3'- aGUGcUGC-GGCCC-GUUagGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 15738 0.67 0.439969
Target:  5'- -gGCGAaGUCGGGCGgcGUgUGGUCGAa -3'
miRNA:   3'- agUGCUgCGGCCCGU--UAgGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 31792 0.67 0.429416
Target:  5'- aUACGACGUucccgacUGGGCGGcUCGcGUCGGCa -3'
miRNA:   3'- aGUGCUGCG-------GCCCGUUaGGC-CAGCUG- -5'
8161 5' -58 NC_001978.2 + 2982 0.68 0.402326
Target:  5'- cCugGGCGCCGuucGGCu-UCCGG-CGAg -3'
miRNA:   3'- aGugCUGCGGC---CCGuuAGGCCaGCUg -5'
8161 5' -58 NC_001978.2 + 26611 0.68 0.393239
Target:  5'- aCGCGGaGCCuGGGCGuUCgGGUCGuACu -3'
miRNA:   3'- aGUGCUgCGG-CCCGUuAGgCCAGC-UG- -5'
8161 5' -58 NC_001978.2 + 19682 0.68 0.393239
Target:  5'- cUCGCG-CGCUGGGCAuggaCUGGgccgaagcgcUCGACu -3'
miRNA:   3'- -AGUGCuGCGGCCCGUua--GGCC----------AGCUG- -5'
8161 5' -58 NC_001978.2 + 9269 0.68 0.393239
Target:  5'- gUCGCGACGgucCUGGGCGacgaaGUUgGGcCGACg -3'
miRNA:   3'- -AGUGCUGC---GGCCCGU-----UAGgCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 19584 0.68 0.393239
Target:  5'- --uCGGCGCCGGuCAGcUCCGuGUCGAa -3'
miRNA:   3'- aguGCUGCGGCCcGUU-AGGC-CAGCUg -5'
8161 5' -58 NC_001978.2 + 14396 0.68 0.384286
Target:  5'- cCGCG-CGCUGGGCAcgguuuacGUCC-GUUGGCu -3'
miRNA:   3'- aGUGCuGCGGCCCGU--------UAGGcCAGCUG- -5'
8161 5' -58 NC_001978.2 + 25971 0.68 0.37547
Target:  5'- gCGCGAC-CCGGGCAAguuccCCaGcCGACu -3'
miRNA:   3'- aGUGCUGcGGCCCGUUa----GGcCaGCUG- -5'
8161 5' -58 NC_001978.2 + 14704 0.68 0.37547
Target:  5'- aUC-CGAUGCCGGu--AUUCGGUCGAg -3'
miRNA:   3'- -AGuGCUGCGGCCcguUAGGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 20470 0.68 0.37547
Target:  5'- -gGCGACGUCGGcCGA-CCGGcgCGACu -3'
miRNA:   3'- agUGCUGCGGCCcGUUaGGCCa-GCUG- -5'
8161 5' -58 NC_001978.2 + 4348 0.68 0.37547
Target:  5'- gUCACGAC-CUGGGCGGcuUCCGGgaaCG-Ca -3'
miRNA:   3'- -AGUGCUGcGGCCCGUU--AGGCCa--GCuG- -5'
8161 5' -58 NC_001978.2 + 29102 0.68 0.374596
Target:  5'- -gGCGAcCGCaCGGGCAAUCuccgcuuCGGUCG-Cu -3'
miRNA:   3'- agUGCU-GCG-GCCCGUUAG-------GCCAGCuG- -5'
8161 5' -58 NC_001978.2 + 22336 0.68 0.366791
Target:  5'- gUC-CGGCGUCGGGUug-CC-GUCGGCg -3'
miRNA:   3'- -AGuGCUGCGGCCCGuuaGGcCAGCUG- -5'
8161 5' -58 NC_001978.2 + 28222 0.69 0.333477
Target:  5'- aCACGcGCGCCuGaGC-AUCCGGcCGACg -3'
miRNA:   3'- aGUGC-UGCGGcC-CGuUAGGCCaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.