miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8163 5' -54 NC_001978.2 + 7427 1.08 0.001183
Target:  5'- uUGCCGUCACCUUCGACUUCCGUGACGc -3'
miRNA:   3'- -ACGGCAGUGGAAGCUGAAGGCACUGC- -5'
8163 5' -54 NC_001978.2 + 13540 0.77 0.202403
Target:  5'- cGCCGUCAUCUUCGGCaagcUCCGauaUGGCu -3'
miRNA:   3'- aCGGCAGUGGAAGCUGa---AGGC---ACUGc -5'
8163 5' -54 NC_001978.2 + 31346 0.75 0.244255
Target:  5'- --aCGUCGCCgUCGGCguuggCCGUGACGa -3'
miRNA:   3'- acgGCAGUGGaAGCUGaa---GGCACUGC- -5'
8163 5' -54 NC_001978.2 + 20437 0.73 0.349133
Target:  5'- gGCCuUCGCCgcuUCGGCUUCCGgggUGACc -3'
miRNA:   3'- aCGGcAGUGGa--AGCUGAAGGC---ACUGc -5'
8163 5' -54 NC_001978.2 + 35865 0.72 0.384455
Target:  5'- uUGCCGUCGUCUUCGGCgUCaGUGAgCGg -3'
miRNA:   3'- -ACGGCAGUGGAAGCUGaAGgCACU-GC- -5'
8163 5' -54 NC_001978.2 + 36173 0.71 0.412454
Target:  5'- gGUCGUCGgCUUCGGCUUCCucgcgcgcccagGUGuCGg -3'
miRNA:   3'- aCGGCAGUgGAAGCUGAAGG------------CACuGC- -5'
8163 5' -54 NC_001978.2 + 11889 0.71 0.422064
Target:  5'- aUGUCGgaGCCUUCGGCgUUCGUGACc -3'
miRNA:   3'- -ACGGCagUGGAAGCUGaAGGCACUGc -5'
8163 5' -54 NC_001978.2 + 36786 0.71 0.422064
Target:  5'- cGCCGUCuc---CGGC-UCCGUGACGg -3'
miRNA:   3'- aCGGCAGuggaaGCUGaAGGCACUGC- -5'
8163 5' -54 NC_001978.2 + 39565 0.71 0.422064
Target:  5'- cUGCCGUCGCCggaagguggUCGACccgUCCGcaccugGGCa -3'
miRNA:   3'- -ACGGCAGUGGa--------AGCUGa--AGGCa-----CUGc -5'
8163 5' -54 NC_001978.2 + 30766 0.71 0.44168
Target:  5'- uUGCCGaCgACCUUCguGACgUUCGUGACGa -3'
miRNA:   3'- -ACGGCaG-UGGAAG--CUGaAGGCACUGC- -5'
8163 5' -54 NC_001978.2 + 37432 0.7 0.461802
Target:  5'- cGCCGUUGCUUcgUUGGC-UCCGUGAUc -3'
miRNA:   3'- aCGGCAGUGGA--AGCUGaAGGCACUGc -5'
8163 5' -54 NC_001978.2 + 1406 0.7 0.49286
Target:  5'- cGCCGgucaGCCguucCGGCUccuUCCGUGGCa -3'
miRNA:   3'- aCGGCag--UGGaa--GCUGA---AGGCACUGc -5'
8163 5' -54 NC_001978.2 + 20794 0.69 0.546596
Target:  5'- uUGCCGUCGCgUcCGAacugUUCgGUGACa -3'
miRNA:   3'- -ACGGCAGUGgAaGCUg---AAGgCACUGc -5'
8163 5' -54 NC_001978.2 + 19432 0.69 0.56863
Target:  5'- uUGCaCGUCACg-UCGGCgUCCGUcggGACGu -3'
miRNA:   3'- -ACG-GCAGUGgaAGCUGaAGGCA---CUGC- -5'
8163 5' -54 NC_001978.2 + 18368 0.68 0.579731
Target:  5'- cGUCGUCGCCcuugUCGGCgucgcuacggCCGUGAa- -3'
miRNA:   3'- aCGGCAGUGGa---AGCUGaa--------GGCACUgc -5'
8163 5' -54 NC_001978.2 + 15818 0.68 0.590877
Target:  5'- cGCCGUCcgacACCUUCGACcacacgCCGcccGACu -3'
miRNA:   3'- aCGGCAG----UGGAAGCUGaa----GGCa--CUGc -5'
8163 5' -54 NC_001978.2 + 24833 0.68 0.61327
Target:  5'- aUGCCGUCGCCcgaCG-CUUCUgacucaggguGUGGCGc -3'
miRNA:   3'- -ACGGCAGUGGaa-GCuGAAGG----------CACUGC- -5'
8163 5' -54 NC_001978.2 + 2982 0.68 0.624496
Target:  5'- -cCUGggCGCCgUUCGGCUUCCGgcgaGACGg -3'
miRNA:   3'- acGGCa-GUGG-AAGCUGAAGGCa---CUGC- -5'
8163 5' -54 NC_001978.2 + 10721 0.67 0.63573
Target:  5'- cGUCGUCGCUU---GCUUCCGcUGugGg -3'
miRNA:   3'- aCGGCAGUGGAagcUGAAGGC-ACugC- -5'
8163 5' -54 NC_001978.2 + 32089 0.67 0.63573
Target:  5'- uUGCCGUU-CCggcCGACcgugCCGUGAUGa -3'
miRNA:   3'- -ACGGCAGuGGaa-GCUGaa--GGCACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.