miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8164 5' -53.5 NC_001978.2 + 12865 0.66 0.735725
Target:  5'- cGCGCUuaUGUcGUCGGGCUCGauugaGUACGg -3'
miRNA:   3'- -UGCGG--GCGuUAGUUCGAGUg----CAUGCa -5'
8164 5' -53.5 NC_001978.2 + 5420 0.66 0.729149
Target:  5'- cCGaCCCGUGAUCAccgugaaguccaucgGGUUCGCGUcggACGUc -3'
miRNA:   3'- uGC-GGGCGUUAGU---------------UCGAGUGCA---UGCA- -5'
8164 5' -53.5 NC_001978.2 + 38072 0.66 0.713665
Target:  5'- gGCGUUCGCGGUCG-GCg-GCGUAUGa -3'
miRNA:   3'- -UGCGGGCGUUAGUuCGagUGCAUGCa -5'
8164 5' -53.5 NC_001978.2 + 1743 0.66 0.699133
Target:  5'- cACGgCgGCAAgcuUCGGGCUCGCGUucaccauuugcuucGCGg -3'
miRNA:   3'- -UGCgGgCGUU---AGUUCGAGUGCA--------------UGCa -5'
8164 5' -53.5 NC_001978.2 + 28701 0.67 0.679956
Target:  5'- uACGCCCGUgcgGAUCGugguuGUUCgcgaaccggucgGCGUACGUc -3'
miRNA:   3'- -UGCGGGCG---UUAGUu----CGAG------------UGCAUGCA- -5'
8164 5' -53.5 NC_001978.2 + 6991 0.67 0.668605
Target:  5'- gACGCaaGCAuuggcAUCGGGCgggaagaCACGUACGg -3'
miRNA:   3'- -UGCGggCGU-----UAGUUCGa------GUGCAUGCa -5'
8164 5' -53.5 NC_001978.2 + 8001 0.67 0.645804
Target:  5'- uCGaCCgGCGuucCGGGCUCgACGUACGUg -3'
miRNA:   3'- uGC-GGgCGUua-GUUCGAG-UGCAUGCA- -5'
8164 5' -53.5 NC_001978.2 + 30674 0.67 0.634378
Target:  5'- uCGCCCugggugGCAagcucaagcgcAUCGAGCacgCACGUACGg -3'
miRNA:   3'- uGCGGG------CGU-----------UAGUUCGa--GUGCAUGCa -5'
8164 5' -53.5 NC_001978.2 + 1626 0.67 0.634378
Target:  5'- aACGaCCGCAAUCAGGCgcgCAUGgucuuCGa -3'
miRNA:   3'- -UGCgGGCGUUAGUUCGa--GUGCau---GCa -5'
8164 5' -53.5 NC_001978.2 + 30900 0.68 0.600129
Target:  5'- gGCGCCCauggacucaauGCAGUCGuuaaCGCGUGCGUg -3'
miRNA:   3'- -UGCGGG-----------CGUUAGUucgaGUGCAUGCA- -5'
8164 5' -53.5 NC_001978.2 + 19302 0.69 0.554917
Target:  5'- cACGCCCGaCGGcuUCAuGGCUUccccgGCGUGCGg -3'
miRNA:   3'- -UGCGGGC-GUU--AGU-UCGAG-----UGCAUGCa -5'
8164 5' -53.5 NC_001978.2 + 7599 0.69 0.532673
Target:  5'- cUGCCCGCAcgggaAAGCUCAacggcCGUACGc -3'
miRNA:   3'- uGCGGGCGUuag--UUCGAGU-----GCAUGCa -5'
8164 5' -53.5 NC_001978.2 + 13253 0.69 0.510757
Target:  5'- cCGCCC-CAGUCGGGUUCGcCGUcGCGg -3'
miRNA:   3'- uGCGGGcGUUAGUUCGAGU-GCA-UGCa -5'
8164 5' -53.5 NC_001978.2 + 38495 0.7 0.49994
Target:  5'- cGCGCUCGCGcgacugacgGUCGuaAGCaccCGCGUACGUg -3'
miRNA:   3'- -UGCGGGCGU---------UAGU--UCGa--GUGCAUGCA- -5'
8164 5' -53.5 NC_001978.2 + 11367 0.7 0.49994
Target:  5'- cGCGCCCGUAuaccUCAAGCgucaGCGUGacCGUc -3'
miRNA:   3'- -UGCGGGCGUu---AGUUCGag--UGCAU--GCA- -5'
8164 5' -53.5 NC_001978.2 + 33890 0.72 0.379573
Target:  5'- -gGCCCGaCAGUCGAGCgacgUCACGU-CGa -3'
miRNA:   3'- ugCGGGC-GUUAGUUCG----AGUGCAuGCa -5'
8164 5' -53.5 NC_001978.2 + 8197 0.72 0.369542
Target:  5'- gGCGUCCGCGAagggcgccgucaUCAaggcaggcucagcGGCUCGCGUGcCGUa -3'
miRNA:   3'- -UGCGGGCGUU------------AGU-------------UCGAGUGCAU-GCA- -5'
8164 5' -53.5 NC_001978.2 + 39431 0.74 0.265806
Target:  5'- -gGUCCGCAAUCAAGCUCGacCGgcCGg -3'
miRNA:   3'- ugCGGGCGUUAGUUCGAGU--GCauGCa -5'
8164 5' -53.5 NC_001978.2 + 7914 1.07 0.00143
Target:  5'- gACGCCCGCAAUCAAGCUCACGUACGUc -3'
miRNA:   3'- -UGCGGGCGUUAGUUCGAGUGCAUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.