Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8165 | 5' | -50.1 | NC_001978.2 | + | 12569 | 0.66 | 0.881169 |
Target: 5'- --cGGCUcgacUCCGGCGA----UUGGUUCa -3' miRNA: 3'- guuCCGA----AGGCCGCUucaaGACUAAG- -5' |
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8165 | 5' | -50.1 | NC_001978.2 | + | 23883 | 0.68 | 0.765841 |
Target: 5'- -cAGGCUUCCGGCGAcgccgggucgAGcgCUGccacuagUCg -3' miRNA: 3'- guUCCGAAGGCCGCU----------UCaaGACua-----AG- -5' |
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8165 | 5' | -50.1 | NC_001978.2 | + | 23955 | 0.69 | 0.709871 |
Target: 5'- -cGGGCUUCCGGCG-GGUaCUGc--- -3' miRNA: 3'- guUCCGAAGGCCGCuUCAaGACuaag -5' |
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8165 | 5' | -50.1 | NC_001978.2 | + | 7809 | 0.7 | 0.686775 |
Target: 5'- uGAGGC-UCCGGCGAuucAGUUCa----- -3' miRNA: 3'- gUUCCGaAGGCCGCU---UCAAGacuaag -5' |
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8165 | 5' | -50.1 | NC_001978.2 | + | 33930 | 0.73 | 0.479606 |
Target: 5'- gGAGGCgaCCGGCGAAGagaucacggcgcUUCUGAa-- -3' miRNA: 3'- gUUCCGaaGGCCGCUUC------------AAGACUaag -5' |
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8165 | 5' | -50.1 | NC_001978.2 | + | 8076 | 1.1 | 0.001947 |
Target: 5'- aCAAGGCUUCCGGCGAAGUUCUGAUUCc -3' miRNA: 3'- -GUUCCGAAGGCCGCUUCAAGACUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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