miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8166 3' -57.5 NC_001978.2 + 9048 1.11 0.000331
Target:  5'- uUGAGCGGGAAGCCGGGAACGACGUCCu -3'
miRNA:   3'- -ACUCGCCCUUCGGCCCUUGCUGCAGG- -5'
8166 3' -57.5 NC_001978.2 + 25579 0.77 0.116086
Target:  5'- aUGcGCGGGAA-CCGGGcgAACGACGUCg -3'
miRNA:   3'- -ACuCGCCCUUcGGCCC--UUGCUGCAGg -5'
8166 3' -57.5 NC_001978.2 + 987 0.74 0.170688
Target:  5'- -cGGCGGGAGucuGgCGGGGGCGACGaCCc -3'
miRNA:   3'- acUCGCCCUU---CgGCCCUUGCUGCaGG- -5'
8166 3' -57.5 NC_001978.2 + 35825 0.74 0.174889
Target:  5'- -cGGCGGGAguggucgAGCUGGGcGACGGCGUUg -3'
miRNA:   3'- acUCGCCCU-------UCGGCCC-UUGCUGCAGg -5'
8166 3' -57.5 NC_001978.2 + 2329 0.71 0.266827
Target:  5'- gGGGCacuGGGAAGCucCGGcGGAUGACGcCCa -3'
miRNA:   3'- aCUCG---CCCUUCG--GCC-CUUGCUGCaGG- -5'
8166 3' -57.5 NC_001978.2 + 30220 0.71 0.276443
Target:  5'- cUGuGCGGGAAgagcgcaacggcaacGCCGGGGcCGACGaaaacgCCg -3'
miRNA:   3'- -ACuCGCCCUU---------------CGGCCCUuGCUGCa-----GG- -5'
8166 3' -57.5 NC_001978.2 + 36655 0.7 0.31535
Target:  5'- cUGAGCGGGAAGCCcuGAGCGccccugagccggucGCGgaaCCu -3'
miRNA:   3'- -ACUCGCCCUUCGGccCUUGC--------------UGCa--GG- -5'
8166 3' -57.5 NC_001978.2 + 38126 0.69 0.349852
Target:  5'- aGAuGUGGGAGcGCaCGGGGcgagccGCuGACGUCCc -3'
miRNA:   3'- aCU-CGCCCUU-CG-GCCCU------UG-CUGCAGG- -5'
8166 3' -57.5 NC_001978.2 + 24418 0.69 0.37547
Target:  5'- cGAGCGcuGAAGCCGGG--CGACacgGUCUa -3'
miRNA:   3'- aCUCGCc-CUUCGGCCCuuGCUG---CAGG- -5'
8166 3' -57.5 NC_001978.2 + 4706 0.69 0.384286
Target:  5'- cGAaCGGGAAGCCccgucucaGGGucguCGuCGUCCg -3'
miRNA:   3'- aCUcGCCCUUCGG--------CCCuu--GCuGCAGG- -5'
8166 3' -57.5 NC_001978.2 + 28079 0.68 0.411544
Target:  5'- cUGAGCGGcuuGAGGCCGGucccaaugcCGcCGUCCu -3'
miRNA:   3'- -ACUCGCC---CUUCGGCCcuu------GCuGCAGG- -5'
8166 3' -57.5 NC_001978.2 + 3871 0.68 0.420893
Target:  5'- uUGAGCGcaucGAAGCCGGGuucaauCGGCuUCUg -3'
miRNA:   3'- -ACUCGCc---CUUCGGCCCuu----GCUGcAGG- -5'
8166 3' -57.5 NC_001978.2 + 9281 0.68 0.420893
Target:  5'- cUGGGCGacGAAGuuGGGc-CGACGUCg -3'
miRNA:   3'- -ACUCGCc-CUUCggCCCuuGCUGCAGg -5'
8166 3' -57.5 NC_001978.2 + 31613 0.68 0.420893
Target:  5'- cGGGCcggacGGGAAGCCGGaGucaAGCGcCGUgCCg -3'
miRNA:   3'- aCUCG-----CCCUUCGGCC-C---UUGCuGCA-GG- -5'
8166 3' -57.5 NC_001978.2 + 36718 0.68 0.439969
Target:  5'- cUGAGCccgucacGGAGCCGGaGACGGCGcCCc -3'
miRNA:   3'- -ACUCGcc-----CUUCGGCCcUUGCUGCaGG- -5'
8166 3' -57.5 NC_001978.2 + 4356 0.68 0.439969
Target:  5'- cUGGGCGGcuu-CCGGGAACGcauCGUUCc -3'
miRNA:   3'- -ACUCGCCcuucGGCCCUUGCu--GCAGG- -5'
8166 3' -57.5 NC_001978.2 + 18754 0.67 0.45755
Target:  5'- cGAGUGucgcGAGCCGGGuuuguacgccguACGACGUCg -3'
miRNA:   3'- aCUCGCcc--UUCGGCCCu-----------UGCUGCAGg -5'
8166 3' -57.5 NC_001978.2 + 36790 0.67 0.459527
Target:  5'- cUGAGCcGGAGccuGCCGacGACGACGuUCCg -3'
miRNA:   3'- -ACUCGcCCUU---CGGCccUUGCUGC-AGG- -5'
8166 3' -57.5 NC_001978.2 + 37900 0.67 0.469478
Target:  5'- gUGAGCGGGucGGCCGGugaagaGAACaGgGUCa -3'
miRNA:   3'- -ACUCGCCCu-UCGGCC------CUUGcUgCAGg -5'
8166 3' -57.5 NC_001978.2 + 4793 0.67 0.489703
Target:  5'- aGAGCGcGAuucccAGCCGGacGGCGACGUUg -3'
miRNA:   3'- aCUCGCcCU-----UCGGCCc-UUGCUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.