miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8166 5' -61 NC_001978.2 + 21493 0.66 0.310846
Target:  5'- -gGGGCuCGACUccgCCGacgugcaccccgugcGCUGAGGCUGu -3'
miRNA:   3'- aaCCCGcGCUGA---GGC---------------CGACUCCGAUu -5'
8166 5' -61 NC_001978.2 + 14174 0.66 0.310846
Target:  5'- -cGGGCGCGGCauggugUCCGGCaacguguggucauccUGcGGGCUc- -3'
miRNA:   3'- aaCCCGCGCUG------AGGCCG---------------AC-UCCGAuu -5'
8166 5' -61 NC_001978.2 + 19393 0.66 0.292663
Target:  5'- -cGGuGCGCGAagaUCCuugccGCUGAGGCg-- -3'
miRNA:   3'- aaCC-CGCGCUg--AGGc----CGACUCCGauu -5'
8166 5' -61 NC_001978.2 + 12562 0.66 0.285336
Target:  5'- aUGGGUGCggcucGACUCCGGCgauuGGUUc- -3'
miRNA:   3'- aACCCGCG-----CUGAGGCCGacu-CCGAuu -5'
8166 5' -61 NC_001978.2 + 28274 0.66 0.285336
Target:  5'- -aGGcGCGCGugUUCGGCgucaAGGCa-- -3'
miRNA:   3'- aaCC-CGCGCugAGGCCGac--UCCGauu -5'
8166 5' -61 NC_001978.2 + 35630 0.66 0.278154
Target:  5'- -gGGGCGcCGuCUCCGGCUcGAcauccGGCg-- -3'
miRNA:   3'- aaCCCGC-GCuGAGGCCGA-CU-----CCGauu -5'
8166 5' -61 NC_001978.2 + 18585 0.67 0.257474
Target:  5'- -gGGGCGCGuCUCCGGC--AGcGUUAc -3'
miRNA:   3'- aaCCCGCGCuGAGGCCGacUC-CGAUu -5'
8166 5' -61 NC_001978.2 + 36790 0.67 0.250866
Target:  5'- -gGGGCGcCGuCUCCGGCUccgugacGGGCUc- -3'
miRNA:   3'- aaCCCGC-GCuGAGGCCGAc------UCCGAuu -5'
8166 5' -61 NC_001978.2 + 17699 0.68 0.225824
Target:  5'- -cGGGCGaCGGCUCCGGac--GGCUc- -3'
miRNA:   3'- aaCCCGC-GCUGAGGCCgacuCCGAuu -5'
8166 5' -61 NC_001978.2 + 30628 0.68 0.214116
Target:  5'- -aGGGCGagaCGACUCCGGCgGAcguugcGGCg-- -3'
miRNA:   3'- aaCCCGC---GCUGAGGCCGaCU------CCGauu -5'
8166 5' -61 NC_001978.2 + 32206 0.69 0.182084
Target:  5'- -aGGGa-UGGCgcaCGGCUGAGGCUGAg -3'
miRNA:   3'- aaCCCgcGCUGag-GCCGACUCCGAUU- -5'
8166 5' -61 NC_001978.2 + 36377 0.69 0.172386
Target:  5'- aUGGGCaUGG-UCCGGCUGGGuGCUGGg -3'
miRNA:   3'- aACCCGcGCUgAGGCCGACUC-CGAUU- -5'
8166 5' -61 NC_001978.2 + 25429 0.69 0.167712
Target:  5'- -cGGGCuCGACgucgCCcaGGCUGAGGCg-- -3'
miRNA:   3'- aaCCCGcGCUGa---GG--CCGACUCCGauu -5'
8166 5' -61 NC_001978.2 + 26401 0.7 0.153938
Target:  5'- aUGGugaagccGCGCGACUCCGGC--AGGCa-- -3'
miRNA:   3'- aACC-------CGCGCUGAGGCCGacUCCGauu -5'
8166 5' -61 NC_001978.2 + 13872 0.77 0.040906
Target:  5'- -cGGGUGCGGCUCCGGCcGucGCUAu -3'
miRNA:   3'- aaCCCGCGCUGAGGCCGaCucCGAUu -5'
8166 5' -61 NC_001978.2 + 9085 1.03 0.000342
Target:  5'- gUUGGGCGCGACUCCGGCUGAGGCUAAg -3'
miRNA:   3'- -AACCCGCGCUGAGGCCGACUCCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.