miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8167 3' -59.1 NC_001978.2 + 19618 0.66 0.409927
Target:  5'- cACGuAGGCCAccGUCCAcccGGGCGuGAUg -3'
miRNA:   3'- cUGCuUCCGGUaaCGGGU---CCCGC-CUG- -5'
8167 3' -59.1 NC_001978.2 + 30935 0.66 0.409927
Target:  5'- cAUGAAGGCaugugcGCCCAGgucGGCGuGACg -3'
miRNA:   3'- cUGCUUCCGguaa--CGGGUC---CCGC-CUG- -5'
8167 3' -59.1 NC_001978.2 + 19857 0.66 0.409927
Target:  5'- cGACGugcgcauuGGCgCcgUGCCgGGGGCcGACg -3'
miRNA:   3'- -CUGCuu------CCG-GuaACGGgUCCCGcCUG- -5'
8167 3' -59.1 NC_001978.2 + 2346 0.66 0.409927
Target:  5'- cGGCGGAugacgcccauuGGCgCG-UGCCUAuGGCGGACg -3'
miRNA:   3'- -CUGCUU-----------CCG-GUaACGGGUcCCGCCUG- -5'
8167 3' -59.1 NC_001978.2 + 39561 0.66 0.404328
Target:  5'- uGACGGc-GCCAcacucgcaguacagcUUGUCCAuGGCGGACa -3'
miRNA:   3'- -CUGCUucCGGU---------------AACGGGUcCCGCCUG- -5'
8167 3' -59.1 NC_001978.2 + 32263 0.66 0.382421
Target:  5'- -uCGAccGGGUCAcgacGCCCAGcGGaCGGACg -3'
miRNA:   3'- cuGCU--UCCGGUaa--CGGGUC-CC-GCCUG- -5'
8167 3' -59.1 NC_001978.2 + 31095 0.67 0.37089
Target:  5'- uGACGAAcGCCGggcGCaaguaacagaccacCCGGGGCGGAg -3'
miRNA:   3'- -CUGCUUcCGGUaa-CG--------------GGUCCCGCCUg -5'
8167 3' -59.1 NC_001978.2 + 8977 0.67 0.356172
Target:  5'- aGGCGAGGGgC-UUGCCCuugcugcGGGUGGcGCu -3'
miRNA:   3'- -CUGCUUCCgGuAACGGGu------CCCGCC-UG- -5'
8167 3' -59.1 NC_001978.2 + 39166 0.67 0.347708
Target:  5'- uGACGccGuGCCGa--CCCGGGGCGaGACg -3'
miRNA:   3'- -CUGCuuC-CGGUaacGGGUCCCGC-CUG- -5'
8167 3' -59.1 NC_001978.2 + 12159 0.68 0.323188
Target:  5'- -uCGggGGCacg-GCUgGGGGCGGcACg -3'
miRNA:   3'- cuGCuuCCGguaaCGGgUCCCGCC-UG- -5'
8167 3' -59.1 NC_001978.2 + 38537 0.69 0.278082
Target:  5'- cGACGggGGCCg--GUUCAGGuucguCGGGCa -3'
miRNA:   3'- -CUGCuuCCGGuaaCGGGUCCc----GCCUG- -5'
8167 3' -59.1 NC_001978.2 + 39669 0.69 0.264203
Target:  5'- uGACGuugcacGuGCCuucgugcUGCCCAGGuGCGGACg -3'
miRNA:   3'- -CUGCuu----C-CGGua-----ACGGGUCC-CGCCUG- -5'
8167 3' -59.1 NC_001978.2 + 32154 0.7 0.208619
Target:  5'- aACGAGGaaGCCGa---CCGGGGCGGACg -3'
miRNA:   3'- cUGCUUC--CGGUaacgGGUCCCGCCUG- -5'
8167 3' -59.1 NC_001978.2 + 17118 0.71 0.182312
Target:  5'- cACGAAGGCCg--GUC--GGGCGGACa -3'
miRNA:   3'- cUGCUUCCGGuaaCGGguCCCGCCUG- -5'
8167 3' -59.1 NC_001978.2 + 11486 0.71 0.180831
Target:  5'- cACGAAGGCCGUUcggucggacgcugcGCCCGGGaaaCGGAa -3'
miRNA:   3'- cUGCUUCCGGUAA--------------CGGGUCCc--GCCUg -5'
8167 3' -59.1 NC_001978.2 + 10185 0.77 0.065817
Target:  5'- cGCGAAGGUCGUUGCC--GGGUGGAUa -3'
miRNA:   3'- cUGCUUCCGGUAACGGguCCCGCCUG- -5'
8167 3' -59.1 NC_001978.2 + 9627 1.08 0.000311
Target:  5'- uGACGAAGGCCAUUGCCCAGGGCGGACc -3'
miRNA:   3'- -CUGCUUCCGGUAACGGGUCCCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.