miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8167 5' -53.5 NC_001978.2 + 16858 0.66 0.7118
Target:  5'- -cGGAuuCGCCCUGGGCGc-GCGCaUGGu -3'
miRNA:   3'- uuCCU--GCGGGAUCUGUucUGCGaACU- -5'
8167 5' -53.5 NC_001978.2 + 36811 0.66 0.700514
Target:  5'- gAAGGACGUCCUGaacGGCcuGGGGCGCc--- -3'
miRNA:   3'- -UUCCUGCGGGAU---CUG--UUCUGCGaacu -5'
8167 5' -53.5 NC_001978.2 + 10288 0.66 0.700514
Target:  5'- cAGGGCGCCCgaauGGCGGcGGCGUg--- -3'
miRNA:   3'- uUCCUGCGGGau--CUGUU-CUGCGaacu -5'
8167 5' -53.5 NC_001978.2 + 33122 0.66 0.677734
Target:  5'- -cGuGACGUCCUGGGCAAG-CGUUg-- -3'
miRNA:   3'- uuC-CUGCGGGAUCUGUUCuGCGAacu -5'
8167 5' -53.5 NC_001978.2 + 18067 0.66 0.666267
Target:  5'- -cGGAgCaCCCUucagcGACAAGGCGCUUGc -3'
miRNA:   3'- uuCCU-GcGGGAu----CUGUUCUGCGAACu -5'
8167 5' -53.5 NC_001978.2 + 37123 0.67 0.620167
Target:  5'- -uGGGCGCCaugGGACcgAAGACGCa--- -3'
miRNA:   3'- uuCCUGCGGga-UCUG--UUCUGCGaacu -5'
8167 5' -53.5 NC_001978.2 + 31431 0.69 0.529148
Target:  5'- -uGGGCcgaaGCCCUaucgggugcggcAGGCAAGcCGCUUGAu -3'
miRNA:   3'- uuCCUG----CGGGA------------UCUGUUCuGCGAACU- -5'
8167 5' -53.5 NC_001978.2 + 40550 0.71 0.413415
Target:  5'- gAAGGGCGCCCggguGACGcugugaugaAGugGCgUGAa -3'
miRNA:   3'- -UUCCUGCGGGau--CUGU---------UCugCGaACU- -5'
8167 5' -53.5 NC_001978.2 + 19662 0.72 0.366195
Target:  5'- cAAGGACGCCUUcGACAAGgcucgcGCGCUg-- -3'
miRNA:   3'- -UUCCUGCGGGAuCUGUUC------UGCGAacu -5'
8167 5' -53.5 NC_001978.2 + 26897 0.73 0.306584
Target:  5'- -cGGACGCCau-GACGAGGCGCg--- -3'
miRNA:   3'- uuCCUGCGGgauCUGUUCUGCGaacu -5'
8167 5' -53.5 NC_001978.2 + 20542 0.77 0.167763
Target:  5'- --cGACGCCCUAGAgAAGA-GCUUGAc -3'
miRNA:   3'- uucCUGCGGGAUCUgUUCUgCGAACU- -5'
8167 5' -53.5 NC_001978.2 + 9661 1.07 0.001293
Target:  5'- gAAGGACGCCCUAGACAAGACGCUUGAc -3'
miRNA:   3'- -UUCCUGCGGGAUCUGUUCUGCGAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.