miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8168 5' -53.2 NC_001978.2 + 20937 0.66 0.769417
Target:  5'- cUCGAUuccCUGCCCGGCGuacAgCCGGUa-- -3'
miRNA:   3'- uAGCUA---GACGGGCUGU---UgGGCUAagg -5'
8168 5' -53.2 NC_001978.2 + 29008 0.66 0.758886
Target:  5'- -aCGA-UUGCCCGACAgACCgGAgcgaCCg -3'
miRNA:   3'- uaGCUaGACGGGCUGU-UGGgCUaa--GG- -5'
8168 5' -53.2 NC_001978.2 + 22490 0.66 0.748217
Target:  5'- gGUCGAgacugGCCCgGACGucuucGCCCaGUUCCu -3'
miRNA:   3'- -UAGCUaga--CGGG-CUGU-----UGGGcUAAGG- -5'
8168 5' -53.2 NC_001978.2 + 9522 0.66 0.748217
Target:  5'- cAUUGccGUCUuaCCGuCgAGCCCGAUUCCc -3'
miRNA:   3'- -UAGC--UAGAcgGGCuG-UUGGGCUAAGG- -5'
8168 5' -53.2 NC_001978.2 + 11653 0.66 0.737422
Target:  5'- -cCGG-C-GCCgGACGACCCGGUaagCCg -3'
miRNA:   3'- uaGCUaGaCGGgCUGUUGGGCUAa--GG- -5'
8168 5' -53.2 NC_001978.2 + 25959 0.67 0.715504
Target:  5'- cGUCGAUaccgUGCCCGGCAaGCCC--UUCg -3'
miRNA:   3'- -UAGCUAg---ACGGGCUGU-UGGGcuAAGg -5'
8168 5' -53.2 NC_001978.2 + 1966 0.67 0.704408
Target:  5'- -cCGGUgaGgCUGACGACCCGAcgcuuUUCUa -3'
miRNA:   3'- uaGCUAgaCgGGCUGUUGGGCU-----AAGG- -5'
8168 5' -53.2 NC_001978.2 + 29068 0.67 0.704408
Target:  5'- -cCGGUCUGUCgGGCAAUCguggCGAcUCCg -3'
miRNA:   3'- uaGCUAGACGGgCUGUUGG----GCUaAGG- -5'
8168 5' -53.2 NC_001978.2 + 2200 0.67 0.693236
Target:  5'- uUCGcuugCUGCCgaCGACGACCCGcuugagCCg -3'
miRNA:   3'- uAGCua--GACGG--GCUGUUGGGCuaa---GG- -5'
8168 5' -53.2 NC_001978.2 + 22266 0.67 0.682001
Target:  5'- cUCGAc--GCCgaCGGCAACCCGAcgCCg -3'
miRNA:   3'- uAGCUagaCGG--GCUGUUGGGCUaaGG- -5'
8168 5' -53.2 NC_001978.2 + 37750 0.68 0.636672
Target:  5'- -gCGcgCUGCCCGACGACggCGAccCCu -3'
miRNA:   3'- uaGCuaGACGGGCUGUUGg-GCUaaGG- -5'
8168 5' -53.2 NC_001978.2 + 16429 0.68 0.602588
Target:  5'- gGUCGGUCUaCCCgggcggcgugGugAACCCGGUUgCg -3'
miRNA:   3'- -UAGCUAGAcGGG----------CugUUGGGCUAAgG- -5'
8168 5' -53.2 NC_001978.2 + 11157 0.69 0.568745
Target:  5'- cAUgGGUCUGCCCGAC--UCCGccAUUUCg -3'
miRNA:   3'- -UAgCUAGACGGGCUGuuGGGC--UAAGG- -5'
8168 5' -53.2 NC_001978.2 + 11683 0.7 0.524426
Target:  5'- uUCGAUCUGCCaCGGCAcaacgGCCgGAa--- -3'
miRNA:   3'- uAGCUAGACGG-GCUGU-----UGGgCUaagg -5'
8168 5' -53.2 NC_001978.2 + 19939 0.7 0.513544
Target:  5'- -cCGAUgUGCCgcacccgcaCGAgAACCCGAUUCa -3'
miRNA:   3'- uaGCUAgACGG---------GCUgUUGGGCUAAGg -5'
8168 5' -53.2 NC_001978.2 + 2733 0.72 0.420507
Target:  5'- gGUCGAUCUuccgGCgCGACGACgCGuGUUCCu -3'
miRNA:   3'- -UAGCUAGA----CGgGCUGUUGgGC-UAAGG- -5'
8168 5' -53.2 NC_001978.2 + 12768 0.72 0.40984
Target:  5'- aGUUGAgCUGaCCCGACAACUcccaacccagcgaCGAUUCCc -3'
miRNA:   3'- -UAGCUaGAC-GGGCUGUUGG-------------GCUAAGG- -5'
8168 5' -53.2 NC_001978.2 + 14738 0.76 0.222689
Target:  5'- cGUUGGUCUGCCCGAaga-CCGcAUUCCu -3'
miRNA:   3'- -UAGCUAGACGGGCUguugGGC-UAAGG- -5'
8168 5' -53.2 NC_001978.2 + 18833 0.82 0.094019
Target:  5'- -aCGGUCUGCCCGACGugCUGAaggauucggcgcacUUCCg -3'
miRNA:   3'- uaGCUAGACGGGCUGUugGGCU--------------AAGG- -5'
8168 5' -53.2 NC_001978.2 + 10830 1.11 0.00088
Target:  5'- uAUCGAUCUGCCCGACAACCCGAUUCCg -3'
miRNA:   3'- -UAGCUAGACGGGCUGUUGGGCUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.