miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8169 5' -52.7 NC_001978.2 + 19149 0.66 0.809519
Target:  5'- cGGCGGgggcCGAagGUGCuAGcGCGAGCGCg -3'
miRNA:   3'- aCUGCCa---GUUg-CACG-UC-UGCUUGCGg -5'
8169 5' -52.7 NC_001978.2 + 30416 0.66 0.809519
Target:  5'- cGACaaGGUC-ACGU-CGGcugagaacGCGGACGCCg -3'
miRNA:   3'- aCUG--CCAGuUGCAcGUC--------UGCUUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 28784 0.66 0.799701
Target:  5'- cGACGG-CAGCGUuugaGCc-GCGAAguCGCCg -3'
miRNA:   3'- aCUGCCaGUUGCA----CGucUGCUU--GCGG- -5'
8169 5' -52.7 NC_001978.2 + 17849 0.66 0.799701
Target:  5'- gGACGcugaCGGCGUGcCGGGCGAAggguCGCUg -3'
miRNA:   3'- aCUGCca--GUUGCAC-GUCUGCUU----GCGG- -5'
8169 5' -52.7 NC_001978.2 + 19641 0.66 0.789697
Target:  5'- cGACaaGGUCAGCGacccGCGcaaGGACGCCu -3'
miRNA:   3'- aCUG--CCAGUUGCa---CGUcugCUUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 18899 0.66 0.789697
Target:  5'- aGGCGcuccgCAGCGUcgauaGCGGG-GAACGCCg -3'
miRNA:   3'- aCUGCca---GUUGCA-----CGUCUgCUUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 11291 0.66 0.789697
Target:  5'- gGACGGUCAcgcugACGcuugagGUAuACGGGCGCg -3'
miRNA:   3'- aCUGCCAGU-----UGCa-----CGUcUGCUUGCGg -5'
8169 5' -52.7 NC_001978.2 + 26731 0.66 0.783611
Target:  5'- cUGACGG---ACGUGUucgggcgcaucacgaAGACG-ACGCCc -3'
miRNA:   3'- -ACUGCCaguUGCACG---------------UCUGCuUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 8816 0.66 0.77952
Target:  5'- cGcCGGUCGGgGgcgaaGCGGGggcacUGAGCGCCg -3'
miRNA:   3'- aCuGCCAGUUgCa----CGUCU-----GCUUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 7152 0.66 0.77952
Target:  5'- -cAUGGUCAACaugGguGGCGAAgGCg -3'
miRNA:   3'- acUGCCAGUUGca-CguCUGCUUgCGg -5'
8169 5' -52.7 NC_001978.2 + 5124 0.66 0.77952
Target:  5'- cGGCGcUCAGCGUuccGCcgaccacGACGAcgACGCCg -3'
miRNA:   3'- aCUGCcAGUUGCA---CGu------CUGCU--UGCGG- -5'
8169 5' -52.7 NC_001978.2 + 11098 0.66 0.769181
Target:  5'- aGACGuccgCAGCGccCAGGCGAcuucGCGCCc -3'
miRNA:   3'- aCUGCca--GUUGCacGUCUGCU----UGCGG- -5'
8169 5' -52.7 NC_001978.2 + 6911 0.66 0.769181
Target:  5'- -aACGGUCcgUGUGCGGgugcGCGGucGCGUCu -3'
miRNA:   3'- acUGCCAGuuGCACGUC----UGCU--UGCGG- -5'
8169 5' -52.7 NC_001978.2 + 5592 0.66 0.769181
Target:  5'- cGGCacgGGUCAgccGCGcgGCAuccuGACGGACGCg -3'
miRNA:   3'- aCUG---CCAGU---UGCa-CGU----CUGCUUGCGg -5'
8169 5' -52.7 NC_001978.2 + 15572 0.66 0.769181
Target:  5'- gGACGG-CAACGUacgucggcGUAGuCGGGCGgCa -3'
miRNA:   3'- aCUGCCaGUUGCA--------CGUCuGCUUGCgG- -5'
8169 5' -52.7 NC_001978.2 + 2352 0.67 0.758692
Target:  5'- aUGACGccCAuuggcGCGUGCcuauGGCGGACGUCc -3'
miRNA:   3'- -ACUGCcaGU-----UGCACGu---CUGCUUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 21120 0.67 0.758692
Target:  5'- aGACGGcCGACGcGCuGAaggUGAuucGCGCCc -3'
miRNA:   3'- aCUGCCaGUUGCaCGuCU---GCU---UGCGG- -5'
8169 5' -52.7 NC_001978.2 + 14777 0.67 0.755518
Target:  5'- cGGCGGUCAuugGCGUuggcGCGGcacuaACGGcaugaagguucgggACGCCg -3'
miRNA:   3'- aCUGCCAGU---UGCA----CGUC-----UGCU--------------UGCGG- -5'
8169 5' -52.7 NC_001978.2 + 15930 0.67 0.748067
Target:  5'- cGACaaGGgCGACacggGCGcGACGGGCGCCg -3'
miRNA:   3'- aCUG--CCaGUUGca--CGU-CUGCUUGCGG- -5'
8169 5' -52.7 NC_001978.2 + 40014 0.67 0.737317
Target:  5'- cGGCccuaaGUCGugGUGgGGGCGcGCGUCa -3'
miRNA:   3'- aCUGc----CAGUugCACgUCUGCuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.