miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8170 3' -54.8 NC_001978.2 + 23824 0.69 0.480508
Target:  5'- cCGGCGUCGC-CGgaaGCCUGGGCacacaccaUGCg -3'
miRNA:   3'- aGCCGCGGCGaGC---UGGACUUGaa------ACG- -5'
8170 3' -54.8 NC_001978.2 + 25575 0.73 0.269863
Target:  5'- gUGGCGCCcagggGCgUGACCUGAGCg--GCa -3'
miRNA:   3'- aGCCGCGG-----CGaGCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 26053 0.72 0.3475
Target:  5'- aCGGCGUCGUgcagUCGGCUgggGAACU-UGCc -3'
miRNA:   3'- aGCCGCGGCG----AGCUGGa--CUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 26165 0.8 0.09378
Target:  5'- gUCGGCGCCcugaguGCUCGAcaCCUGAACg--GCg -3'
miRNA:   3'- -AGCCGCGG------CGAGCU--GGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 27113 0.68 0.533744
Target:  5'- gUCGGCGg-GCauugUGGCCUGGGCggUGCg -3'
miRNA:   3'- -AGCCGCggCGa---GCUGGACUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 28057 0.67 0.620312
Target:  5'- gUCGGCGCCGgacacucagggCGACCU-AACg--GCg -3'
miRNA:   3'- -AGCCGCGGCga---------GCUGGAcUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 28108 0.69 0.501514
Target:  5'- cCGGCGCCGacgggUCGACguagaacgcaCUGAGCg--GCu -3'
miRNA:   3'- aGCCGCGGCg----AGCUG----------GACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 29156 0.77 0.16594
Target:  5'- gUCGGCgccuGCCGCUCGACCgGAACcguacguaUGCc -3'
miRNA:   3'- -AGCCG----CGGCGAGCUGGaCUUGaa------ACG- -5'
8170 3' -54.8 NC_001978.2 + 32283 0.66 0.633801
Target:  5'- gCGcGCuGCCGCUCaGCCUcAGCcgUGCg -3'
miRNA:   3'- aGC-CG-CGGCGAGcUGGAcUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 32471 0.72 0.339061
Target:  5'- aCGGUGCCGaCUCGACCgacugacGAcCUgggGCg -3'
miRNA:   3'- aGCCGCGGC-GAGCUGGa------CUuGAaa-CG- -5'
8170 3' -54.8 NC_001978.2 + 33570 0.66 0.687544
Target:  5'- gUCGGCGCCGUgaccgucgggugUGACCccGGGCcggaaUGCa -3'
miRNA:   3'- -AGCCGCGGCGa-----------GCUGGa-CUUGaa---ACG- -5'
8170 3' -54.8 NC_001978.2 + 33754 0.7 0.401222
Target:  5'- gUCGG-GUCGCUCGACCgUGAAg---GCg -3'
miRNA:   3'- -AGCCgCGGCGAGCUGG-ACUUgaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 34697 0.71 0.382735
Target:  5'- gUCGGCGUCgGCUCGaACCcGGcaaGCUggGCg -3'
miRNA:   3'- -AGCCGCGG-CGAGC-UGGaCU---UGAaaCG- -5'
8170 3' -54.8 NC_001978.2 + 35001 0.68 0.555636
Target:  5'- cUCaGUGCCGUUCGAUCUGucCUUgucUGUc -3'
miRNA:   3'- -AGcCGCGGCGAGCUGGACuuGAA---ACG- -5'
8170 3' -54.8 NC_001978.2 + 35467 0.66 0.689765
Target:  5'- cUGGCGuCCGCagcaacggcguUCGGCCUGGGa---GCg -3'
miRNA:   3'- aGCCGC-GGCG-----------AGCUGGACUUgaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 35994 0.66 0.633801
Target:  5'- cCGGagacuGCCGC-CGACCcGGGCguugugUGCg -3'
miRNA:   3'- aGCCg----CGGCGaGCUGGaCUUGaa----ACG- -5'
8170 3' -54.8 NC_001978.2 + 40896 0.67 0.611327
Target:  5'- -gGGUGCgUGCUCGAC----GCUUUGCg -3'
miRNA:   3'- agCCGCG-GCGAGCUGgacuUGAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.