miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8170 3' -54.8 NC_001978.2 + 33754 0.7 0.401222
Target:  5'- gUCGG-GUCGCUCGACCgUGAAg---GCg -3'
miRNA:   3'- -AGCCgCGGCGAGCUGG-ACUUgaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 23824 0.69 0.480508
Target:  5'- cCGGCGUCGC-CGgaaGCCUGGGCacacaccaUGCg -3'
miRNA:   3'- aGCCGCGGCGaGC---UGGACUUGaa------ACG- -5'
8170 3' -54.8 NC_001978.2 + 21237 0.68 0.530486
Target:  5'- uUCGcGCuGCCGCcgacgcguucgaccUUGACCUGAGCgc-GCu -3'
miRNA:   3'- -AGC-CG-CGGCG--------------AGCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 27113 0.68 0.533744
Target:  5'- gUCGGCGg-GCauugUGGCCUGGGCggUGCg -3'
miRNA:   3'- -AGCCGCggCGa---GCUGGACUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 26165 0.8 0.09378
Target:  5'- gUCGGCGCCcugaguGCUCGAcaCCUGAACg--GCg -3'
miRNA:   3'- -AGCCGCGG------CGAGCU--GGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 9665 0.76 0.175424
Target:  5'- cUCGGCGCCGUUCaGCCccaUGGACUUguacGCc -3'
miRNA:   3'- -AGCCGCGGCGAGcUGG---ACUUGAAa---CG- -5'
8170 3' -54.8 NC_001978.2 + 9276 0.72 0.314645
Target:  5'- gUCGGcCGUCGCUcCGGCCgGAACgagccccugUUGCc -3'
miRNA:   3'- -AGCC-GCGGCGA-GCUGGaCUUGa--------AACG- -5'
8170 3' -54.8 NC_001978.2 + 26053 0.72 0.3475
Target:  5'- aCGGCGUCGUgcagUCGGCUgggGAACU-UGCc -3'
miRNA:   3'- aGCCGCGGCG----AGCUGGa--CUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 34697 0.71 0.382735
Target:  5'- gUCGGCGUCgGCUCGaACCcGGcaaGCUggGCg -3'
miRNA:   3'- -AGCCGCGG-CGAGC-UGGaCU---UGAaaCG- -5'
8170 3' -54.8 NC_001978.2 + 8653 0.69 0.501514
Target:  5'- gUCGGCGg-GCUCGAUCUcaggGAACU-UGCg -3'
miRNA:   3'- -AGCCGCggCGAGCUGGA----CUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 28108 0.69 0.501514
Target:  5'- cCGGCGCCGacgggUCGACguagaacgcaCUGAGCg--GCu -3'
miRNA:   3'- aGCCGCGGCg----AGCUG----------GACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 7997 0.69 0.501514
Target:  5'- cCGGCGUUccggGCUCGACguacgUGAGCUugaUUGCg -3'
miRNA:   3'- aGCCGCGG----CGAGCUGg----ACUUGA---AACG- -5'
8170 3' -54.8 NC_001978.2 + 21159 0.67 0.577782
Target:  5'- cUCGGCGUCGCucuucUCGGCCUucGGCUcaaGCu -3'
miRNA:   3'- -AGCCGCGGCG-----AGCUGGAc-UUGAaa-CG- -5'
8170 3' -54.8 NC_001978.2 + 8961 0.67 0.600114
Target:  5'- gUCGGCGUCGCccauaaucgUGAUCUGAAUgg-GUc -3'
miRNA:   3'- -AGCCGCGGCGa--------GCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 32283 0.66 0.633801
Target:  5'- gCGcGCuGCCGCUCaGCCUcAGCcgUGCg -3'
miRNA:   3'- aGC-CG-CGGCGAGcUGGAcUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 11573 0.66 0.645041
Target:  5'- aCGucGCGUaaaGCUCGACC-GAAUgUUGCa -3'
miRNA:   3'- aGC--CGCGg--CGAGCUGGaCUUGaAACG- -5'
8170 3' -54.8 NC_001978.2 + 11702 0.66 0.689765
Target:  5'- cCGGCGCCGgucccugcccUUCGAUCUGccACg--GCa -3'
miRNA:   3'- aGCCGCGGC----------GAGCUGGACu-UGaaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.