miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8171 5' -54.9 NC_001978.2 + 12472 0.66 0.604085
Target:  5'- gUCGCUguGUaucgacuggGCGGCAGUGcUGCcgucuccgucGGCg -3'
miRNA:   3'- aAGUGAguCA---------UGCCGUCGCaACG----------CCG- -5'
8171 5' -54.9 NC_001978.2 + 30799 0.67 0.581388
Target:  5'- cUUCGgUCGacGUcgacACGGCGGCGUgaagGaCGGCa -3'
miRNA:   3'- -AAGUgAGU--CA----UGCCGUCGCAa---C-GCCG- -5'
8171 5' -54.9 NC_001978.2 + 6868 0.67 0.558873
Target:  5'- -aCACaaGGUcggcguucACGGCAGCGcaaGCGGCc -3'
miRNA:   3'- aaGUGagUCA--------UGCCGUCGCaa-CGCCG- -5'
8171 5' -54.9 NC_001978.2 + 26186 0.67 0.525592
Target:  5'- gUCGCcCAGgaUGCGcGCAGCGU--CGGCg -3'
miRNA:   3'- aAGUGaGUC--AUGC-CGUCGCAacGCCG- -5'
8171 5' -54.9 NC_001978.2 + 3505 0.68 0.503825
Target:  5'- -cCGCUCagaAGUACGGCAGCaaguucuUUGCcaauGGCg -3'
miRNA:   3'- aaGUGAG---UCAUGCCGUCGc------AACG----CCG- -5'
8171 5' -54.9 NC_001978.2 + 10271 0.68 0.500593
Target:  5'- -gCGCUCAGUccaugauucagggcGCccgaauGGCGGCGgcGUGGCu -3'
miRNA:   3'- aaGUGAGUCA--------------UG------CCGUCGCaaCGCCG- -5'
8171 5' -54.9 NC_001978.2 + 22506 0.68 0.499518
Target:  5'- gUCACgugCAGaACGGCAGCGccgucgaacucCGGCa -3'
miRNA:   3'- aAGUGa--GUCaUGCCGUCGCaac--------GCCG- -5'
8171 5' -54.9 NC_001978.2 + 27261 0.68 0.493088
Target:  5'- gUCGCcCGGUACu-CAcGCGUUGCGGUg -3'
miRNA:   3'- aAGUGaGUCAUGccGU-CGCAACGCCG- -5'
8171 5' -54.9 NC_001978.2 + 17338 0.68 0.482457
Target:  5'- -gCGCUCAGguguucuuCGGCAaCGgggGCGGCu -3'
miRNA:   3'- aaGUGAGUCau------GCCGUcGCaa-CGCCG- -5'
8171 5' -54.9 NC_001978.2 + 244 0.69 0.461537
Target:  5'- --gACUCA--GCGGCAGCGU--UGGCg -3'
miRNA:   3'- aagUGAGUcaUGCCGUCGCAacGCCG- -5'
8171 5' -54.9 NC_001978.2 + 30622 0.7 0.386767
Target:  5'- -cCACcCAGggcgagacgacucCGGCGGaCGUUGCGGCg -3'
miRNA:   3'- aaGUGaGUCau-----------GCCGUC-GCAACGCCG- -5'
8171 5' -54.9 NC_001978.2 + 16544 0.7 0.364868
Target:  5'- cUUCGCgcgUGGUugGgGCGGCGUUuCGGCu -3'
miRNA:   3'- -AAGUGa--GUCAugC-CGUCGCAAcGCCG- -5'
8171 5' -54.9 NC_001978.2 + 25469 0.71 0.356
Target:  5'- --aAC-CGGU-CGGCGGCGUagucgGCGGCa -3'
miRNA:   3'- aagUGaGUCAuGCCGUCGCAa----CGCCG- -5'
8171 5' -54.9 NC_001978.2 + 13191 0.71 0.347285
Target:  5'- ----gUCGGgguCGGCAGCGUcgaGCGGCa -3'
miRNA:   3'- aagugAGUCau-GCCGUCGCAa--CGCCG- -5'
8171 5' -54.9 NC_001978.2 + 21481 0.71 0.313965
Target:  5'- gUCcUUCAGUACGGCGuGCGUcuUGCcgucGGCg -3'
miRNA:   3'- aAGuGAGUCAUGCCGU-CGCA--ACG----CCG- -5'
8171 5' -54.9 NC_001978.2 + 19264 0.73 0.234997
Target:  5'- gUCACUCucgGCGGCGGCaagGCGGUu -3'
miRNA:   3'- aAGUGAGucaUGCCGUCGcaaCGCCG- -5'
8171 5' -54.9 NC_001978.2 + 31135 0.76 0.153062
Target:  5'- gUCGCUCA--GCGGCAGCGgcuucgagcacaGCGGCa -3'
miRNA:   3'- aAGUGAGUcaUGCCGUCGCaa----------CGCCG- -5'
8171 5' -54.9 NC_001978.2 + 22881 0.77 0.134142
Target:  5'- -gCGCggGG-ACGGCGGCGUUGUGGCc -3'
miRNA:   3'- aaGUGagUCaUGCCGUCGCAACGCCG- -5'
8171 5' -54.9 NC_001978.2 + 11679 1.09 0.000632
Target:  5'- cUUCACUCAGUACGGCAGCGUUGCGGCu -3'
miRNA:   3'- -AAGUGAGUCAUGCCGUCGCAACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.