miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8172 3' -57.8 NC_001978.2 + 20372 0.66 0.517317
Target:  5'- cCCGGAagcCGaaGCGGCGAagGCCGa -3'
miRNA:   3'- -GGCCUguuGCgcCGCCGUUagCGGUa -5'
8172 3' -57.8 NC_001978.2 + 11690 0.66 0.517317
Target:  5'- aCGG-CAGCGuuGCGGC--UCGCCc- -3'
miRNA:   3'- gGCCuGUUGCgcCGCCGuuAGCGGua -5'
8172 3' -57.8 NC_001978.2 + 17586 0.66 0.506804
Target:  5'- aCCGGcgacguugGCGACGuUGGCGGC--UCGaCCAc -3'
miRNA:   3'- -GGCC--------UGUUGC-GCCGCCGuuAGC-GGUa -5'
8172 3' -57.8 NC_001978.2 + 28063 0.66 0.496384
Target:  5'- gCCGGACAcucaggGCGaccuaaCGGCGGUcuuccGGUCGCUg- -3'
miRNA:   3'- -GGCCUGU------UGC------GCCGCCG-----UUAGCGGua -5'
8172 3' -57.8 NC_001978.2 + 34337 0.66 0.496384
Target:  5'- gUCGuGuACAGCGUGGCuccGGCAAgcucCGCCGa -3'
miRNA:   3'- -GGC-C-UGUUGCGCCG---CCGUUa---GCGGUa -5'
8172 3' -57.8 NC_001978.2 + 40012 0.66 0.486062
Target:  5'- aCCGGcccuaaguCGugGUGGgGGCGcgCGUCAg -3'
miRNA:   3'- -GGCCu-------GUugCGCCgCCGUuaGCGGUa -5'
8172 3' -57.8 NC_001978.2 + 29023 0.66 0.475843
Target:  5'- aCCGGAgCGACcgaaGCGGagauugccCGuGCGGUCGCCGa -3'
miRNA:   3'- -GGCCU-GUUG----CGCC--------GC-CGUUAGCGGUa -5'
8172 3' -57.8 NC_001978.2 + 27211 0.66 0.465731
Target:  5'- aCCGGGCGACGUccGauGCGcUCGCCGg -3'
miRNA:   3'- -GGCCUGUUGCGc-CgcCGUuAGCGGUa -5'
8172 3' -57.8 NC_001978.2 + 26383 0.66 0.465731
Target:  5'- uCCGGcagGCAAC-CGGCGaGCAcaagCGCCGc -3'
miRNA:   3'- -GGCC---UGUUGcGCCGC-CGUua--GCGGUa -5'
8172 3' -57.8 NC_001978.2 + 35710 0.66 0.465731
Target:  5'- aCGGACGACaCGGCcacGCugccgCGCCAUg -3'
miRNA:   3'- gGCCUGUUGcGCCGc--CGuua--GCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 5042 0.66 0.465731
Target:  5'- gCCGGAUcaAGCGCGGUauCGA-CGCCAUu -3'
miRNA:   3'- -GGCCUG--UUGCGCCGccGUUaGCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 8419 0.67 0.455733
Target:  5'- --cGACAA--CGGCGGCAAUaCGCCGUu -3'
miRNA:   3'- ggcCUGUUgcGCCGCCGUUA-GCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 19586 0.67 0.455733
Target:  5'- aCGGGCAGCGCaaCGGCAcguUCGUUGUg -3'
miRNA:   3'- gGCCUGUUGCGccGCCGUu--AGCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 41187 0.67 0.426454
Target:  5'- -gGGaACAACGCuGCGGCGAagaugCGUCGUg -3'
miRNA:   3'- ggCC-UGUUGCGcCGCCGUUa----GCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 5299 0.67 0.426454
Target:  5'- uCCGcGAUcauGCGCGGUGGCGcGUCGaCCu- -3'
miRNA:   3'- -GGC-CUGu--UGCGCCGCCGU-UAGC-GGua -5'
8172 3' -57.8 NC_001978.2 + 8825 0.67 0.416944
Target:  5'- -gGGGCGAaGCGGgGGCAcugagCGCCGc -3'
miRNA:   3'- ggCCUGUUgCGCCgCCGUua---GCGGUa -5'
8172 3' -57.8 NC_001978.2 + 10289 0.68 0.380239
Target:  5'- -aGGGCgcccgaAugGCGGCGGCGuggcuucUCGCUAUg -3'
miRNA:   3'- ggCCUG------UugCGCCGCCGUu------AGCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 37840 0.68 0.374923
Target:  5'- aCCGGACGugG-GGCgaagugccccuugucGGCGGgggCGCCGUc -3'
miRNA:   3'- -GGCCUGUugCgCCG---------------CCGUUa--GCGGUA- -5'
8172 3' -57.8 NC_001978.2 + 14105 0.69 0.354165
Target:  5'- aCGGACucAACGCGuucGCGuuAAUCGCCAc -3'
miRNA:   3'- gGCCUG--UUGCGC---CGCcgUUAGCGGUa -5'
8172 3' -57.8 NC_001978.2 + 26789 0.69 0.354165
Target:  5'- -aGGGCAACgGCGGgGGCAuUC-CCAa -3'
miRNA:   3'- ggCCUGUUG-CGCCgCCGUuAGcGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.