miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8172 5' -54.4 NC_001978.2 + 18123 0.66 0.720899
Target:  5'- aCGGuuGGCccgguaaGACCACGUgggaCGCGCUGa -3'
miRNA:   3'- -GCUu-CCGcag----CUGGUGCAa---GUGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 6338 0.66 0.710009
Target:  5'- ----cGUGcUCGACCACGUgUCGCGCa- -3'
miRNA:   3'- gcuucCGC-AGCUGGUGCA-AGUGCGac -5'
8172 5' -54.4 NC_001978.2 + 17602 0.66 0.69904
Target:  5'- aCGuuGGCGgcUCGACCACGccugacaagCcCGCUGa -3'
miRNA:   3'- -GCuuCCGC--AGCUGGUGCaa-------GuGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 19536 0.66 0.69904
Target:  5'- ---cGGCGcCGACCACa-UCACGCc- -3'
miRNA:   3'- gcuuCCGCaGCUGGUGcaAGUGCGac -5'
8172 5' -54.4 NC_001978.2 + 37870 0.66 0.688003
Target:  5'- gCGggGGCGcCGuCC-CGUacaacgUCGCGCg- -3'
miRNA:   3'- -GCuuCCGCaGCuGGuGCA------AGUGCGac -5'
8172 5' -54.4 NC_001978.2 + 12000 0.67 0.665775
Target:  5'- aGGAcGGCGUCGGCUAUGg-CGCGUc- -3'
miRNA:   3'- gCUU-CCGCAGCUGGUGCaaGUGCGac -5'
8172 5' -54.4 NC_001978.2 + 24870 0.67 0.642297
Target:  5'- -aAAGGCGacccaucUUGACCACGUgCAccCGCUGa -3'
miRNA:   3'- gcUUCCGC-------AGCUGGUGCAaGU--GCGAC- -5'
8172 5' -54.4 NC_001978.2 + 39576 0.67 0.621016
Target:  5'- gGAAGGUgGUCGACC-CGUccgCAC-CUGg -3'
miRNA:   3'- gCUUCCG-CAGCUGGuGCAa--GUGcGAC- -5'
8172 5' -54.4 NC_001978.2 + 23099 0.68 0.587514
Target:  5'- uCGggGGCGUUGuugcCCGC-UUCACuuguGCUGa -3'
miRNA:   3'- -GCuuCCGCAGCu---GGUGcAAGUG----CGAC- -5'
8172 5' -54.4 NC_001978.2 + 922 0.68 0.564254
Target:  5'- cCGAAGGCccucaaccggcuuGUCGACUccgGCGgcuucgUCGCGCUu -3'
miRNA:   3'- -GCUUCCG-------------CAGCUGG---UGCa-----AGUGCGAc -5'
8172 5' -54.4 NC_001978.2 + 31340 0.69 0.543423
Target:  5'- cCGucGGCGUUGGCCgugacgaacucgACGUUggcgccgaCGCGCUGa -3'
miRNA:   3'- -GCuuCCGCAGCUGG------------UGCAA--------GUGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 39687 0.69 0.543423
Target:  5'- cCGAAGGCGaCGAagagACGUUgGCGCUu -3'
miRNA:   3'- -GCUUCCGCaGCUgg--UGCAAgUGCGAc -5'
8172 5' -54.4 NC_001978.2 + 32317 0.69 0.543423
Target:  5'- cCGAAGGCGccacgcaaGACgGCGUcacagaagCGCGCUGa -3'
miRNA:   3'- -GCUUCCGCag------CUGgUGCAa-------GUGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 6069 0.69 0.53256
Target:  5'- --cGGGCGUCGACaagaagacCGUcggCGCGCUGa -3'
miRNA:   3'- gcuUCCGCAGCUGgu------GCAa--GUGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 22100 0.69 0.521776
Target:  5'- cCGggGugaguaCGUCGGCCGUGUgCGCGCUGa -3'
miRNA:   3'- -GCuuCc-----GCAGCUGGUGCAaGUGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 20493 0.7 0.479559
Target:  5'- -cAGGGCGUCGACCugGggCugaaGCUc -3'
miRNA:   3'- gcUUCCGCAGCUGGugCaaGug--CGAc -5'
8172 5' -54.4 NC_001978.2 + 30895 0.7 0.469265
Target:  5'- uCGguGGCGUgacCGACUACGggCACGgUGa -3'
miRNA:   3'- -GCuuCCGCA---GCUGGUGCaaGUGCgAC- -5'
8172 5' -54.4 NC_001978.2 + 30767 0.7 0.439085
Target:  5'- aCGGcaaGGGCGUCGAgCACGUaCcgGCGCUc -3'
miRNA:   3'- -GCU---UCCGCAGCUgGUGCAaG--UGCGAc -5'
8172 5' -54.4 NC_001978.2 + 32851 0.71 0.419591
Target:  5'- gGAAGGUGacCGACgCAUGUUCgagcACGCUGa -3'
miRNA:   3'- gCUUCCGCa-GCUG-GUGCAAG----UGCGAC- -5'
8172 5' -54.4 NC_001978.2 + 12845 0.71 0.419591
Target:  5'- gCGGGuGGCGUCGGCCGua-UCGCGCUu -3'
miRNA:   3'- -GCUU-CCGCAGCUGGUgcaAGUGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.