miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8173 5' -52.5 NC_001978.2 + 15389 0.66 0.808729
Target:  5'- -aAGACGaacGCCGACGuuGC-CGUUGg -3'
miRNA:   3'- gaUCUGUa--CGGCUGCuuCGuGCAGCa -5'
8173 5' -52.5 NC_001978.2 + 34180 0.66 0.798802
Target:  5'- -cGGGCAcGCCGgaaGggGCAcCGUUGUa -3'
miRNA:   3'- gaUCUGUaCGGCug-CuuCGU-GCAGCA- -5'
8173 5' -52.5 NC_001978.2 + 36969 0.66 0.797798
Target:  5'- -gAGACGUGCCccCGAcugacugccuucgGGUugGUCGg -3'
miRNA:   3'- gaUCUGUACGGcuGCU-------------UCGugCAGCa -5'
8173 5' -52.5 NC_001978.2 + 32016 0.66 0.788687
Target:  5'- -aAGGCGgagcuucagGCUGAgcgGggGCGCGUCGUc -3'
miRNA:   3'- gaUCUGUa--------CGGCUg--CuuCGUGCAGCA- -5'
8173 5' -52.5 NC_001978.2 + 13389 0.66 0.788687
Target:  5'- -cGGACAcuucgcgGCUGACGAcgucggGGCGUGUCGUg -3'
miRNA:   3'- gaUCUGUa------CGGCUGCU------UCGUGCAGCA- -5'
8173 5' -52.5 NC_001978.2 + 34360 0.66 0.778396
Target:  5'- ---aACAUGCCGGgcaGGGuucGCGCGUCGUg -3'
miRNA:   3'- gaucUGUACGGCUg--CUU---CGUGCAGCA- -5'
8173 5' -52.5 NC_001978.2 + 39677 0.66 0.778396
Target:  5'- --cGcCAUGCUGACGuuGCACGugccuUCGUg -3'
miRNA:   3'- gauCuGUACGGCUGCuuCGUGC-----AGCA- -5'
8173 5' -52.5 NC_001978.2 + 33228 0.66 0.778396
Target:  5'- -aGGACAUGCCGACuucGC-CGuUCGg -3'
miRNA:   3'- gaUCUGUACGGCUGcuuCGuGC-AGCa -5'
8173 5' -52.5 NC_001978.2 + 15875 0.67 0.746593
Target:  5'- -cGGGCAcgucgGCCGACGggGUGCccguGUUGUu -3'
miRNA:   3'- gaUCUGUa----CGGCUGCuuCGUG----CAGCA- -5'
8173 5' -52.5 NC_001978.2 + 27517 0.67 0.746593
Target:  5'- -gGGACcgGUagCGGCGGcaGGCGCGUCa- -3'
miRNA:   3'- gaUCUGuaCG--GCUGCU--UCGUGCAGca -5'
8173 5' -52.5 NC_001978.2 + 25221 0.67 0.746593
Target:  5'- --uGACAUGCCGugcCGGuugugacacgGGCgACGUCGUc -3'
miRNA:   3'- gauCUGUACGGCu--GCU----------UCG-UGCAGCA- -5'
8173 5' -52.5 NC_001978.2 + 9811 0.67 0.735725
Target:  5'- gCUGGGCAagGUCGACGgcGCGgcgaaGUCGg -3'
miRNA:   3'- -GAUCUGUa-CGGCUGCuuCGUg----CAGCa -5'
8173 5' -52.5 NC_001978.2 + 10743 0.68 0.702498
Target:  5'- -gGGGCGUGCCG-CGAAGgGCGcuaUCa- -3'
miRNA:   3'- gaUCUGUACGGCuGCUUCgUGC---AGca -5'
8173 5' -52.5 NC_001978.2 + 6739 0.68 0.691258
Target:  5'- -cGGGCAauccgGUCGACGcuGAGCGCGcCGUg -3'
miRNA:   3'- gaUCUGUa----CGGCUGC--UUCGUGCaGCA- -5'
8173 5' -52.5 NC_001978.2 + 24492 0.68 0.687873
Target:  5'- --cGACGcGCUGAgcaacgccauaaccCGggGCGCGUCGg -3'
miRNA:   3'- gauCUGUaCGGCU--------------GCuuCGUGCAGCa -5'
8173 5' -52.5 NC_001978.2 + 35917 0.68 0.668605
Target:  5'- --cGAUAUGCCGACGucGGGCAagggaagGUCGg -3'
miRNA:   3'- gauCUGUACGGCUGC--UUCGUg------CAGCa -5'
8173 5' -52.5 NC_001978.2 + 33907 0.68 0.657217
Target:  5'- --cGACGUGuuGGCGGAGCA--UCGg -3'
miRNA:   3'- gauCUGUACggCUGCUUCGUgcAGCa -5'
8173 5' -52.5 NC_001978.2 + 31720 0.69 0.622949
Target:  5'- -aGGGCGUcGUCGGCGAaagggcuggGGUGCGUCGa -3'
miRNA:   3'- gaUCUGUA-CGGCUGCU---------UCGUGCAGCa -5'
8173 5' -52.5 NC_001978.2 + 20272 0.69 0.611529
Target:  5'- -aGGGCAucaucacgacccUGCCGACGAAGCACc---- -3'
miRNA:   3'- gaUCUGU------------ACGGCUGCUUCGUGcagca -5'
8173 5' -52.5 NC_001978.2 + 36796 0.69 0.611529
Target:  5'- -cGGAgCcUGCCGACGAcgacguuccGGCGCGUCu- -3'
miRNA:   3'- gaUCU-GuACGGCUGCU---------UCGUGCAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.