Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8174 | 3' | -54.6 | NC_001978.2 | + | 35834 | 0.68 | 0.580854 |
Target: 5'- aCGAC-CUGggcgcCGACCUucccuUGcCCGACGUCGg -3' miRNA: 3'- -GUUGaGGCa----GCUGGA-----AC-GGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 19574 | 0.67 | 0.618569 |
Target: 5'- uCAGCUCCGUgucgaacgucCGGCCgugaagggucacgGCaCGGCGUCa -3' miRNA: 3'- -GUUGAGGCA----------GCUGGaa-----------CG-GCUGCAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 16197 | 0.68 | 0.58859 |
Target: 5'- gCAACUCCcuuGUCGGCaacgggaaucgccCCGACGUCGg -3' miRNA: 3'- -GUUGAGG---CAGCUGgaac---------GGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 35930 | 0.69 | 0.515715 |
Target: 5'- uGACgUCUGgaaUCGAUa-UGCCGACGUCGg -3' miRNA: 3'- gUUG-AGGC---AGCUGgaACGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 32117 | 0.7 | 0.484243 |
Target: 5'- cCGGCUCCGaCGACUUcacgaaGCCGACGaCGc -3' miRNA: 3'- -GUUGAGGCaGCUGGAa-----CGGCUGCaGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 29047 | 0.7 | 0.44378 |
Target: 5'- gCGACUCCGcccccguaGACCUUGCCGAaucCGg -3' miRNA: 3'- -GUUGAGGCag------CUGGAACGGCUgcaGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 5128 | 0.72 | 0.360244 |
Target: 5'- aCAGCgUCCGUCG-CCUUaaUGGCGUCGa -3' miRNA: 3'- -GUUG-AGGCAGCuGGAAcgGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 12342 | 0.72 | 0.34323 |
Target: 5'- gAGC-CCGUUGaaGCCguccgcUGCCGACGUCGu -3' miRNA: 3'- gUUGaGGCAGC--UGGa-----ACGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 6803 | 0.75 | 0.253483 |
Target: 5'- -cGCUCagCGUCGACCggauUGcCCGGCGUCGu -3' miRNA: 3'- guUGAG--GCAGCUGGa---AC-GGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 35747 | 0.67 | 0.62525 |
Target: 5'- cCGGCUCCGUacggGGCUUcgagUGCCGACcgGUCu -3' miRNA: 3'- -GUUGAGGCAg---CUGGA----ACGGCUG--CAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 32338 | 0.67 | 0.668631 |
Target: 5'- gAACgUCCGUCcgcugggcgucguGACCcgGUCGACGUUGa -3' miRNA: 3'- gUUG-AGGCAG-------------CUGGaaCGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 33140 | 0.66 | 0.713643 |
Target: 5'- aCAACcaUGUCGACCg-GCgCGGCGUUGg -3' miRNA: 3'- -GUUGagGCAGCUGGaaCG-GCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 13745 | 0.66 | 0.713643 |
Target: 5'- aAGCUUCGU--GCCgUUGCCGuuGUCGg -3' miRNA: 3'- gUUGAGGCAgcUGG-AACGGCugCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 16315 | 0.66 | 0.702761 |
Target: 5'- aAGCgugaCCGUCgGACCcggcuucgugUUGaCCGACGUCa -3' miRNA: 3'- gUUGa---GGCAG-CUGG----------AAC-GGCUGCAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 17693 | 0.66 | 0.702761 |
Target: 5'- aCGGCUCCGgacggcucagCGGgCUUGUcaggCGugGUCGa -3' miRNA: 3'- -GUUGAGGCa---------GCUgGAACG----GCugCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 30426 | 0.66 | 0.691809 |
Target: 5'- gCGGCUUCGgcgCGuuCCUUGCUGA-GUCGc -3' miRNA: 3'- -GUUGAGGCa--GCu-GGAACGGCUgCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 2623 | 0.66 | 0.680797 |
Target: 5'- uGGCUCaGUCGACCgucacgGCaCG-CGUCGu -3' miRNA: 3'- gUUGAGgCAGCUGGaa----CG-GCuGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 12245 | 0.66 | 0.680797 |
Target: 5'- --uCUCCGcUCGACCaUGCCcACGUg- -3' miRNA: 3'- guuGAGGC-AGCUGGaACGGcUGCAgc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 36843 | 0.67 | 0.669739 |
Target: 5'- aGGCUCCGgcucaGGCU---CCGGCGUCGg -3' miRNA: 3'- gUUGAGGCag---CUGGaacGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 9882 | 0.78 | 0.147468 |
Target: 5'- cCGACUucgccgcgCCGUCGACCUUGCCcaGCGUCu -3' miRNA: 3'- -GUUGA--------GGCAGCUGGAACGGc-UGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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