miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8175 3' -53.2 NC_001978.2 + 20358 0.66 0.812962
Target:  5'- --cUGACGcCGGUCAcCcCGgAAGCCGa -3'
miRNA:   3'- ggcACUGCaGCCAGUuGuGC-UUCGGC- -5'
8175 3' -53.2 NC_001978.2 + 29140 0.66 0.812962
Target:  5'- aCUGUGucCGUCacgGGUCGGCGCcu-GCCGc -3'
miRNA:   3'- -GGCACu-GCAG---CCAGUUGUGcuuCGGC- -5'
8175 3' -53.2 NC_001978.2 + 30778 0.66 0.812962
Target:  5'- uUCGUGACGU---UCGugACGAccgcauGGCCGa -3'
miRNA:   3'- -GGCACUGCAgccAGUugUGCU------UCGGC- -5'
8175 3' -53.2 NC_001978.2 + 20473 0.66 0.812962
Target:  5'- uUCGgcGACGUCGGccgacCGGCGCGAcucgacuucGGCCu -3'
miRNA:   3'- -GGCa-CUGCAGCCa----GUUGUGCU---------UCGGc -5'
8175 3' -53.2 NC_001978.2 + 30067 0.66 0.807222
Target:  5'- gCGUGA-GUCGGUCGcuucgaucacuucgcGCucaGCGGcaAGCCGg -3'
miRNA:   3'- gGCACUgCAGCCAGU---------------UG---UGCU--UCGGC- -5'
8175 3' -53.2 NC_001978.2 + 18533 0.66 0.803358
Target:  5'- gCCGUGAagggaGUCGG-CAACcugaGCGgcGCUa -3'
miRNA:   3'- -GGCACUg----CAGCCaGUUG----UGCuuCGGc -5'
8175 3' -53.2 NC_001978.2 + 17299 0.66 0.803358
Target:  5'- uCCGgaacaaggGGCGUUGGUCGGCGuaucCGGcGGUCGg -3'
miRNA:   3'- -GGCa-------CUGCAGCCAGUUGU----GCU-UCGGC- -5'
8175 3' -53.2 NC_001978.2 + 22340 0.66 0.792582
Target:  5'- aCCGguccGGCGUCGGguugccgUCGGCGuCG-AGCCa -3'
miRNA:   3'- -GGCa---CUGCAGCC-------AGUUGU-GCuUCGGc -5'
8175 3' -53.2 NC_001978.2 + 18729 0.66 0.78361
Target:  5'- gCCGUacGACGUCGGaaugagcgggUCGAUuCGGAGCg- -3'
miRNA:   3'- -GGCA--CUGCAGCC----------AGUUGuGCUUCGgc -5'
8175 3' -53.2 NC_001978.2 + 25714 0.66 0.78059
Target:  5'- uCCGggcGACGcgcucacugccguaUCGGUCGGCuAUGAcGCCGu -3'
miRNA:   3'- -GGCa--CUGC--------------AGCCAGUUG-UGCUuCGGC- -5'
8175 3' -53.2 NC_001978.2 + 24429 0.66 0.773488
Target:  5'- gCCG-GGCGacaCGGUCuAUcUGAAGCCGg -3'
miRNA:   3'- -GGCaCUGCa--GCCAGuUGuGCUUCGGC- -5'
8175 3' -53.2 NC_001978.2 + 25764 0.67 0.767342
Target:  5'- uCCGggguGCGUCucuGGUCAACaacccugaguuggucGCGGAGCUGg -3'
miRNA:   3'- -GGCac--UGCAG---CCAGUUG---------------UGCUUCGGC- -5'
8175 3' -53.2 NC_001978.2 + 22188 0.67 0.763216
Target:  5'- aCGUagGGCGUCaGaUCAGCGCGcacacGGCCGa -3'
miRNA:   3'- gGCA--CUGCAGcC-AGUUGUGCu----UCGGC- -5'
8175 3' -53.2 NC_001978.2 + 6013 0.67 0.763216
Target:  5'- -aGUGcugaacuucGCGUcaaccgaaCGGUCGACACGGAGCg- -3'
miRNA:   3'- ggCAC---------UGCA--------GCCAGUUGUGCUUCGgc -5'
8175 3' -53.2 NC_001978.2 + 19595 0.67 0.752805
Target:  5'- gCGUGAUGUggucggcgcCGGUCAGCuccguguCGAacguccGGCCGu -3'
miRNA:   3'- gGCACUGCA---------GCCAGUUGu------GCU------UCGGC- -5'
8175 3' -53.2 NC_001978.2 + 19379 0.67 0.751757
Target:  5'- aCGUGACGUgcaagCGGU--GCGCGAAgauccuuGCCGc -3'
miRNA:   3'- gGCACUGCA-----GCCAguUGUGCUU-------CGGC- -5'
8175 3' -53.2 NC_001978.2 + 35377 0.67 0.742268
Target:  5'- gCCGUcgcugggugGACGUacuuacaugCGGUCcagAugACGGAGCCGc -3'
miRNA:   3'- -GGCA---------CUGCA---------GCCAG---UugUGCUUCGGC- -5'
8175 3' -53.2 NC_001978.2 + 21660 0.67 0.731618
Target:  5'- gCUGUGACGg----CAugACGAAGCCc -3'
miRNA:   3'- -GGCACUGCagccaGUugUGCUUCGGc -5'
8175 3' -53.2 NC_001978.2 + 32782 0.67 0.731618
Target:  5'- gCGUGcucgaacauGCGUCGGUCAccuuccuuguGCGCGAcGUCu -3'
miRNA:   3'- gGCAC---------UGCAGCCAGU----------UGUGCUuCGGc -5'
8175 3' -53.2 NC_001978.2 + 8605 0.67 0.731618
Target:  5'- cCCGccGACGUCGGgaAGC-UGAAGCUGa -3'
miRNA:   3'- -GGCa-CUGCAGCCagUUGuGCUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.