miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8175 5' -54.1 NC_001978.2 + 35927 0.66 0.728195
Target:  5'- cGUCugGa--AUCGauaUGCCGACGUcGGg -3'
miRNA:   3'- -CAGugCgaaUGGCg--ACGGCUGCAaCC- -5'
8175 5' -54.1 NC_001978.2 + 4593 0.66 0.717303
Target:  5'- uUCAC-CUU-CCGCgUGCuCGACGgUGGg -3'
miRNA:   3'- cAGUGcGAAuGGCG-ACG-GCUGCaACC- -5'
8175 5' -54.1 NC_001978.2 + 11849 0.66 0.717303
Target:  5'- uUCGCggGCUUAUCGCUGacggcUCGACG-UGGc -3'
miRNA:   3'- cAGUG--CGAAUGGCGAC-----GGCUGCaACC- -5'
8175 5' -54.1 NC_001978.2 + 28501 0.66 0.717303
Target:  5'- cGUguUGC-UGCCGCuUGCCGACcUUGa -3'
miRNA:   3'- -CAguGCGaAUGGCG-ACGGCUGcAACc -5'
8175 5' -54.1 NC_001978.2 + 39687 0.66 0.717303
Target:  5'- uGUCGag--UGCCGCcaUGCUGACGUUGc -3'
miRNA:   3'- -CAGUgcgaAUGGCG--ACGGCUGCAACc -5'
8175 5' -54.1 NC_001978.2 + 31349 0.66 0.706324
Target:  5'- aUCACGU----CGCcGUCGGCGUUGGc -3'
miRNA:   3'- cAGUGCGaaugGCGaCGGCUGCAACC- -5'
8175 5' -54.1 NC_001978.2 + 22741 0.66 0.695268
Target:  5'- cGUCGUGUUcgUCGCUGCCGuCGUcGGg -3'
miRNA:   3'- -CAGUGCGAauGGCGACGGCuGCAaCC- -5'
8175 5' -54.1 NC_001978.2 + 3697 0.66 0.684148
Target:  5'- -cUACGCggUGCgCGUUGUCGACGccGGa -3'
miRNA:   3'- caGUGCGa-AUG-GCGACGGCUGCaaCC- -5'
8175 5' -54.1 NC_001978.2 + 12337 0.66 0.684148
Target:  5'- cGUUgaaGCcguCCGCUGCCGACGUc-- -3'
miRNA:   3'- -CAGug-CGaauGGCGACGGCUGCAacc -5'
8175 5' -54.1 NC_001978.2 + 28721 0.67 0.672975
Target:  5'- uUCGCgGCUcaaaCGCUGCCGuCGUcGGa -3'
miRNA:   3'- cAGUG-CGAaug-GCGACGGCuGCAaCC- -5'
8175 5' -54.1 NC_001978.2 + 38568 0.68 0.605487
Target:  5'- uUCGCGCUgaaggucgGCCGCcuUGUCuuCGUUGGc -3'
miRNA:   3'- cAGUGCGAa-------UGGCG--ACGGcuGCAACC- -5'
8175 5' -54.1 NC_001978.2 + 16678 0.68 0.587545
Target:  5'- -gCGCGCUUGCCGCuaugcggucaacgcaUGUCGGCGc--- -3'
miRNA:   3'- caGUGCGAAUGGCG---------------ACGGCUGCaacc -5'
8175 5' -54.1 NC_001978.2 + 10190 0.68 0.565261
Target:  5'- cGUCGCGCUUgacgucacccaggcgACCaCUGCCuuaccGGCGUUGa -3'
miRNA:   3'- -CAGUGCGAA---------------UGGcGACGG-----CUGCAACc -5'
8175 5' -54.1 NC_001978.2 + 37154 0.69 0.532281
Target:  5'- gGUCACGCUgaguaaaaauuuggGCCGgaGCCGGCa---- -3'
miRNA:   3'- -CAGUGCGAa-------------UGGCgaCGGCUGcaacc -5'
8175 5' -54.1 NC_001978.2 + 29841 0.7 0.495781
Target:  5'- uUC-CGggUGCCGacucCUGCCGACGggGGg -3'
miRNA:   3'- cAGuGCgaAUGGC----GACGGCUGCaaCC- -5'
8175 5' -54.1 NC_001978.2 + 39554 0.7 0.485259
Target:  5'- --gACuCUUACCGCUGCCGuCGccGGa -3'
miRNA:   3'- cagUGcGAAUGGCGACGGCuGCaaCC- -5'
8175 5' -54.1 NC_001978.2 + 12321 0.71 0.414888
Target:  5'- -gUACGCcUGCCGCUucGCCGACGg--- -3'
miRNA:   3'- caGUGCGaAUGGCGA--CGGCUGCaacc -5'
8175 5' -54.1 NC_001978.2 + 22989 0.72 0.359809
Target:  5'- uGUUGCGCguugUACCGCccggguUGCCGACGUc-- -3'
miRNA:   3'- -CAGUGCGa---AUGGCG------ACGGCUGCAacc -5'
8175 5' -54.1 NC_001978.2 + 1104 0.74 0.272713
Target:  5'- -aCACGCUcgacaugGCCGUUGCCGACGccgcuugcUGGg -3'
miRNA:   3'- caGUGCGAa------UGGCGACGGCUGCa-------ACC- -5'
8175 5' -54.1 NC_001978.2 + 12410 0.75 0.239078
Target:  5'- uUCACGCUgACCGUgUGCCGgACGUcGGg -3'
miRNA:   3'- cAGUGCGAaUGGCG-ACGGC-UGCAaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.