miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8176 3' -55.6 NC_001978.2 + 3539 0.69 0.422064
Target:  5'- uGGCGCCaUGCCGGgcGCUGugGUUgagguaCCg -3'
miRNA:   3'- -UCGCGG-ACGGCUaaCGGUugCAAg-----GG- -5'
8176 3' -55.6 NC_001978.2 + 33205 0.68 0.503426
Target:  5'- cAGCGUCgGCgGcaacgUGCCAACGcuugCCCa -3'
miRNA:   3'- -UCGCGGaCGgCua---ACGGUUGCaa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 17384 0.68 0.503426
Target:  5'- gAGCGCCgaccGCCGGauacGCCGACcaacgCCCc -3'
miRNA:   3'- -UCGCGGa---CGGCUaa--CGGUUGcaa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 21946 0.68 0.472043
Target:  5'- cGGCaGCaUGCCGAUaaCCGACGUcacgCCCg -3'
miRNA:   3'- -UCG-CGgACGGCUAacGGUUGCAa---GGG- -5'
8176 3' -55.6 NC_001978.2 + 9872 0.68 0.472043
Target:  5'- cGCGCC-GUCGAccUUGCCcAGCG-UCUCa -3'
miRNA:   3'- uCGCGGaCGGCU--AACGG-UUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 16090 0.68 0.482397
Target:  5'- uAGgGCCggauaucacccuUGCCGc-UGCCGACGUcggggcgauUCCCg -3'
miRNA:   3'- -UCgCGG------------ACGGCuaACGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 15945 0.68 0.472043
Target:  5'- gGGCGCgacgggcGCCGAc--UCGACGUUCCCg -3'
miRNA:   3'- -UCGCGga-----CGGCUaacGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 16456 0.67 0.546596
Target:  5'- cAGCGCUUGCgGAgu-CCAACuGUUCUUc -3'
miRNA:   3'- -UCGCGGACGgCUaacGGUUG-CAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 39893 0.67 0.557582
Target:  5'- cGCGCCUGCCGcgcgGUCuuCGUacagCUCu -3'
miRNA:   3'- uCGCGGACGGCuaa-CGGuuGCAa---GGG- -5'
8176 3' -55.6 NC_001978.2 + 26312 0.67 0.56863
Target:  5'- cGGCGCUUgugcucGCCGGUUGCCugcCGgagUCgCg -3'
miRNA:   3'- -UCGCGGA------CGGCUAACGGuu-GCa--AGgG- -5'
8176 3' -55.6 NC_001978.2 + 12835 0.67 0.546596
Target:  5'- gGGCGCguaaUGCCGGUcGgCAGCGUcgCCa -3'
miRNA:   3'- -UCGCGg---ACGGCUAaCgGUUGCAa-GGg -5'
8176 3' -55.6 NC_001978.2 + 25015 0.67 0.557582
Target:  5'- -cCGCCgacugaGCCgGGUUGCCGAC--UCCCu -3'
miRNA:   3'- ucGCGGa-----CGG-CUAACGGUUGcaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 33534 0.67 0.546596
Target:  5'- aAGCGCgUUGCCGc-UGCCAuuGCGggugucgCCCu -3'
miRNA:   3'- -UCGCG-GACGGCuaACGGU--UGCaa-----GGG- -5'
8176 3' -55.6 NC_001978.2 + 22994 0.67 0.535681
Target:  5'- cGCGUUguaccGCCcgGGUUGCCGACG-UCCUu -3'
miRNA:   3'- uCGCGGa----CGG--CUAACGGUUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 22490 0.67 0.546596
Target:  5'- cAGCGCC-GUCGAacuCCGGCaucgGUUCCCg -3'
miRNA:   3'- -UCGCGGaCGGCUaacGGUUG----CAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 35558 0.66 0.624496
Target:  5'- cAGCGCCggaUGUCGA--GCCGgagACGgcgCCCc -3'
miRNA:   3'- -UCGCGG---ACGGCUaaCGGU---UGCaa-GGG- -5'
8176 3' -55.6 NC_001978.2 + 32285 0.66 0.624496
Target:  5'- uGGCGCgCUGCCGcucaGCCucagccguGCGccaUCCCu -3'
miRNA:   3'- -UCGCG-GACGGCuaa-CGGu-------UGCa--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 23718 0.66 0.63573
Target:  5'- cAGCGCCacccuUGCCGAcgcGCuCAACGUcgUCUUc -3'
miRNA:   3'- -UCGCGG-----ACGGCUaa-CG-GUUGCA--AGGG- -5'
8176 3' -55.6 NC_001978.2 + 41413 0.66 0.63573
Target:  5'- gGGCGgCU-CCGAagUUGgCGGCGUgugCCCu -3'
miRNA:   3'- -UCGCgGAcGGCU--AACgGUUGCAa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 4778 0.66 0.63573
Target:  5'- cGCGCC-GCCGAcUGaagAGCGcgaUUCCCa -3'
miRNA:   3'- uCGCGGaCGGCUaACgg-UUGC---AAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.