Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8176 | 3' | -55.6 | NC_001978.2 | + | 16679 | 0.66 | 0.598702 |
Target: 5'- cGCGCUUGCCGcUaugcggucaacgcaUGUCGGCGccgUUCCg -3' miRNA: 3'- uCGCGGACGGCuA--------------ACGGUUGCa--AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 12911 | 0.66 | 0.61327 |
Target: 5'- aAGCGCgauacgGCCGAcgccacccGCCGACGUgcUUCCg -3' miRNA: 3'- -UCGCGga----CGGCUaa------CGGUUGCA--AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 32285 | 0.66 | 0.624496 |
Target: 5'- uGGCGCgCUGCCGcucaGCCucagccguGCGccaUCCCu -3' miRNA: 3'- -UCGCG-GACGGCuaa-CGGu-------UGCa--AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 35558 | 0.66 | 0.624496 |
Target: 5'- cAGCGCCggaUGUCGA--GCCGgagACGgcgCCCc -3' miRNA: 3'- -UCGCGG---ACGGCUaaCGGU---UGCaa-GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 41413 | 0.66 | 0.63573 |
Target: 5'- gGGCGgCU-CCGAagUUGgCGGCGUgugCCCu -3' miRNA: 3'- -UCGCgGAcGGCU--AACgGUUGCAa--GGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 23718 | 0.66 | 0.63573 |
Target: 5'- cAGCGCCacccuUGCCGAcgcGCuCAACGUcgUCUUc -3' miRNA: 3'- -UCGCGG-----ACGGCUaa-CG-GUUGCA--AGGG- -5' |
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8176 | 3' | -55.6 | NC_001978.2 | + | 4778 | 0.66 | 0.63573 |
Target: 5'- cGCGCC-GCCGAcUGaagAGCGcgaUUCCCa -3' miRNA: 3'- uCGCGGaCGGCUaACgg-UUGC---AAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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