miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8176 3' -55.6 NC_001978.2 + 17384 0.68 0.503426
Target:  5'- gAGCGCCgaccGCCGGauacGCCGACcaacgCCCc -3'
miRNA:   3'- -UCGCGGa---CGGCUaa--CGGUUGcaa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 33205 0.68 0.503426
Target:  5'- cAGCGUCgGCgGcaacgUGCCAACGcuugCCCa -3'
miRNA:   3'- -UCGCGGaCGgCua---ACGGUUGCaa--GGG- -5'
8176 3' -55.6 NC_001978.2 + 16090 0.68 0.482397
Target:  5'- uAGgGCCggauaucacccuUGCCGc-UGCCGACGUcggggcgauUCCCg -3'
miRNA:   3'- -UCgCGG------------ACGGCuaACGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 9872 0.68 0.472043
Target:  5'- cGCGCC-GUCGAccUUGCCcAGCG-UCUCa -3'
miRNA:   3'- uCGCGGaCGGCU--AACGG-UUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 21946 0.68 0.472043
Target:  5'- cGGCaGCaUGCCGAUaaCCGACGUcacgCCCg -3'
miRNA:   3'- -UCG-CGgACGGCUAacGGUUGCAa---GGG- -5'
8176 3' -55.6 NC_001978.2 + 15945 0.68 0.472043
Target:  5'- gGGCGCgacgggcGCCGAc--UCGACGUUCCCg -3'
miRNA:   3'- -UCGCGga-----CGGCUaacGGUUGCAAGGG- -5'
8176 3' -55.6 NC_001978.2 + 9073 0.69 0.44168
Target:  5'- cGGCGCCaaUGCCGAcgGCgaUAGCGccaCCCg -3'
miRNA:   3'- -UCGCGG--ACGGCUaaCG--GUUGCaa-GGG- -5'
8176 3' -55.6 NC_001978.2 + 41389 0.69 0.44168
Target:  5'- cAGCGCUUGCaCG-UUGCCuucAACGUcuucgccgCCCa -3'
miRNA:   3'- -UCGCGGACG-GCuAACGG---UUGCAa-------GGG- -5'
8176 3' -55.6 NC_001978.2 + 35212 0.69 0.431807
Target:  5'- gGGCGCCggaagGacaCGGgcGCCAugGUUgCCg -3'
miRNA:   3'- -UCGCGGa----Cg--GCUaaCGGUugCAAgGG- -5'
8176 3' -55.6 NC_001978.2 + 28414 0.69 0.427894
Target:  5'- cGGCGCCcagguUGCCGAagcguugcUUGCCAugGgcgagacgcugaCCCa -3'
miRNA:   3'- -UCGCGG-----ACGGCU--------AACGGUugCaa----------GGG- -5'
8176 3' -55.6 NC_001978.2 + 3539 0.69 0.422064
Target:  5'- uGGCGCCaUGCCGGgcGCUGugGUUgagguaCCg -3'
miRNA:   3'- -UCGCGG-ACGGCUaaCGGUugCAAg-----GG- -5'
8176 3' -55.6 NC_001978.2 + 36525 0.7 0.382633
Target:  5'- cGCGCCcagcuucgucacGCCGuAUUcGCCAACGU-CCCu -3'
miRNA:   3'- uCGCGGa-----------CGGC-UAA-CGGUUGCAaGGG- -5'
8176 3' -55.6 NC_001978.2 + 144 0.7 0.366501
Target:  5'- cGUGCCgaagUGCCGcUUGCCcAGCGUUCa- -3'
miRNA:   3'- uCGCGG----ACGGCuAACGG-UUGCAAGgg -5'
8176 3' -55.6 NC_001978.2 + 38964 0.71 0.316186
Target:  5'- aGGCGCCUuCCc---GCCGACGUaCCCg -3'
miRNA:   3'- -UCGCGGAcGGcuaaCGGUUGCAaGGG- -5'
8176 3' -55.6 NC_001978.2 + 36640 0.71 0.316186
Target:  5'- aGGCGCUUGCCGAc-GCUgAGCGggaagCCCu -3'
miRNA:   3'- -UCGCGGACGGCUaaCGG-UUGCaa---GGG- -5'
8176 3' -55.6 NC_001978.2 + 15492 0.72 0.293051
Target:  5'- cGCcCCUGCCGAcccgacuacGCCGACGUacguugccgUCCCg -3'
miRNA:   3'- uCGcGGACGGCUaa-------CGGUUGCA---------AGGG- -5'
8176 3' -55.6 NC_001978.2 + 38654 0.72 0.278375
Target:  5'- gGGCGCUccGCCGucccgaacGCCGACGUgCCCg -3'
miRNA:   3'- -UCGCGGa-CGGCuaa-----CGGUUGCAaGGG- -5'
8176 3' -55.6 NC_001978.2 + 36792 0.72 0.278375
Target:  5'- gAGCcggaGCCUGCCGAcga-CGACGUUCCg -3'
miRNA:   3'- -UCG----CGGACGGCUaacgGUUGCAAGGg -5'
8176 3' -55.6 NC_001978.2 + 30655 0.72 0.271259
Target:  5'- cGGCGCUUGaaGAcgUGCUGACGgUCCCc -3'
miRNA:   3'- -UCGCGGACggCUa-ACGGUUGCaAGGG- -5'
8176 3' -55.6 NC_001978.2 + 22632 0.73 0.25079
Target:  5'- cGCGCCcgguaGCgGGUUGCCGAC--UCCCu -3'
miRNA:   3'- uCGCGGa----CGgCUAACGGUUGcaAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.