miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8177 3' -53.2 NC_001978.2 + 12197 0.66 0.744951
Target:  5'- aGCGGAGagacgGUUgccAUUCCgGCAGCGUCc -3'
miRNA:   3'- aCGCUUCa----UAGac-UGAGG-CGUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 12490 0.66 0.722956
Target:  5'- gGCGGcAGUG-CUGccguCUCCGuCGGCGUUc -3'
miRNA:   3'- aCGCU-UCAUaGACu---GAGGC-GUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 10961 0.67 0.689258
Target:  5'- aUGCGu--UGUCgGGUUCCGCGGCGUg -3'
miRNA:   3'- -ACGCuucAUAGaCUGAGGCGUCGCAg -5'
8177 3' -53.2 NC_001978.2 + 35457 0.67 0.666472
Target:  5'- cGCGuccGUA-CUGGCgUCCGCAGCa-- -3'
miRNA:   3'- aCGCuu-CAUaGACUG-AGGCGUCGcag -5'
8177 3' -53.2 NC_001978.2 + 37512 0.68 0.620575
Target:  5'- cGCGAGcGUcGUCUGuCUUCGuCGGCGUa -3'
miRNA:   3'- aCGCUU-CA-UAGACuGAGGC-GUCGCAg -5'
8177 3' -53.2 NC_001978.2 + 8087 0.68 0.574846
Target:  5'- gGCGAAGU-UCUGAUUCCccaGGCGa- -3'
miRNA:   3'- aCGCUUCAuAGACUGAGGcg-UCGCag -5'
8177 3' -53.2 NC_001978.2 + 7517 0.68 0.574846
Target:  5'- aGcCGGAGUGcUUGugUgCGUGGCGUCa -3'
miRNA:   3'- aC-GCUUCAUaGACugAgGCGUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 16390 0.69 0.562388
Target:  5'- cGCGGAGUcgagCggGGCaacuccgUCCGCAGCGUUc -3'
miRNA:   3'- aCGCUUCAua--Ga-CUG-------AGGCGUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 13202 0.69 0.541051
Target:  5'- gGCuGAAgcGUGUCgGGgUCgGCAGCGUCg -3'
miRNA:   3'- aCG-CUU--CAUAGaCUgAGgCGUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 11028 0.69 0.529929
Target:  5'- cGCGAAGUcgCcugGGCgCUGCGGaCGUCu -3'
miRNA:   3'- aCGCUUCAuaGa--CUGaGGCGUC-GCAG- -5'
8177 3' -53.2 NC_001978.2 + 24552 0.7 0.507948
Target:  5'- aGCGAAGUGUUcaaUGcguuCgUCgGCGGCGUCa -3'
miRNA:   3'- aCGCUUCAUAG---ACu---G-AGgCGUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 18921 0.7 0.465219
Target:  5'- cGUGAcgacgacgggcAGgcUCagGcGCUCCGCAGCGUCg -3'
miRNA:   3'- aCGCU-----------UCauAGa-C-UGAGGCGUCGCAG- -5'
8177 3' -53.2 NC_001978.2 + 28388 0.71 0.413599
Target:  5'- aUGUGggGUGUC-GACUCCGUcaacuccGGCGcCc -3'
miRNA:   3'- -ACGCuuCAUAGaCUGAGGCG-------UCGCaG- -5'
8177 3' -53.2 NC_001978.2 + 16462 1.1 0.000888
Target:  5'- uUGCGAAGUAUCUGACUCCGCAGCGUCu -3'
miRNA:   3'- -ACGCUUCAUAGACUGAGGCGUCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.