miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8178 3' -53.2 NC_001978.2 + 17084 0.66 0.786123
Target:  5'- -gGUUGUGuCGGUCGcgaAgGCcgagGUCGGCu -3'
miRNA:   3'- ggCGAUAC-GCCAGU---UgCGua--CAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 14400 0.66 0.786123
Target:  5'- gCGCUGggcaCGGUUuACGUccGUUGGCu -3'
miRNA:   3'- gGCGAUac--GCCAGuUGCGuaCAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 12254 0.66 0.786123
Target:  5'- aUCGUUGcGCGGcUGACGac-GUCGGCa -3'
miRNA:   3'- -GGCGAUaCGCCaGUUGCguaCAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 36541 0.66 0.786123
Target:  5'- -gGCUGaGCGuGUCGGCuCAUgacuggGUCGGCg -3'
miRNA:   3'- ggCGAUaCGC-CAGUUGcGUA------CAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 41172 0.66 0.765554
Target:  5'- gCUGCUAUcgcccGUGGgaaCAACGC-UG-CGGCg -3'
miRNA:   3'- -GGCGAUA-----CGCCa--GUUGCGuACaGCCG- -5'
8178 3' -53.2 NC_001978.2 + 19437 0.66 0.755046
Target:  5'- aCCGCU-UGCacgucacGUCGGCGUccGUCGGg -3'
miRNA:   3'- -GGCGAuACGc------CAGUUGCGuaCAGCCg -5'
8178 3' -53.2 NC_001978.2 + 33514 0.66 0.755046
Target:  5'- uUCGUguUGCGGcUCAGCGCGcGgucuuucuUCGGCc -3'
miRNA:   3'- -GGCGauACGCC-AGUUGCGUaC--------AGCCG- -5'
8178 3' -53.2 NC_001978.2 + 32733 0.66 0.751868
Target:  5'- aCGCccgGCGGcuucccccagggcgUCAGCGUcaGUCGGCc -3'
miRNA:   3'- gGCGauaCGCC--------------AGUUGCGuaCAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 22114 0.66 0.744407
Target:  5'- uUCGCUGcccaGGUCGGCGCgaaccuucGUGUacCGGCg -3'
miRNA:   3'- -GGCGAUacg-CCAGUUGCG--------UACA--GCCG- -5'
8178 3' -53.2 NC_001978.2 + 30848 0.66 0.743336
Target:  5'- uCgGCcAUGCGGUCGucacgaACGUcacgaagGUcGUCGGCa -3'
miRNA:   3'- -GgCGaUACGCCAGU------UGCG-------UA-CAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 32415 0.66 0.741191
Target:  5'- gCCGUUcgGCGGacgcuUCAGCGCGcuucUGUgacgccgucuugcgUGGCg -3'
miRNA:   3'- -GGCGAuaCGCC-----AGUUGCGU----ACA--------------GCCG- -5'
8178 3' -53.2 NC_001978.2 + 23918 0.67 0.722782
Target:  5'- gCGCUGUGCuGagugagcgugcUCGACGCu--UCGGCu -3'
miRNA:   3'- gGCGAUACGcC-----------AGUUGCGuacAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 6795 0.67 0.72169
Target:  5'- gCCGCUugcgcUGCcGUgAACGCcgaccuuGUGUCGGUc -3'
miRNA:   3'- -GGCGAu----ACGcCAgUUGCG-------UACAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 24570 0.67 0.711821
Target:  5'- uUCGUcg-GCGGcgUCAugGUcggcauauGUGUCGGCg -3'
miRNA:   3'- -GGCGauaCGCC--AGUugCG--------UACAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 5957 0.67 0.700779
Target:  5'- cCCGgUAcuUGCucaGGUCGGCGaacagaaccuUGUCGGCa -3'
miRNA:   3'- -GGCgAU--ACG---CCAGUUGCgu--------ACAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 22238 0.67 0.687435
Target:  5'- aUCGUUcgAUGUGGUCAugcGCGUAUGgcucgacgccgaCGGCa -3'
miRNA:   3'- -GGCGA--UACGCCAGU---UGCGUACa-----------GCCG- -5'
8178 3' -53.2 NC_001978.2 + 27140 0.68 0.667275
Target:  5'- gCGCgGUGCGGUCgaGugGUAUGcgaaUGGCc -3'
miRNA:   3'- gGCGaUACGCCAG--UugCGUACa---GCCG- -5'
8178 3' -53.2 NC_001978.2 + 32362 0.68 0.667275
Target:  5'- uCCGCcgaaCGGcUCGACGCAUGgaagGGCg -3'
miRNA:   3'- -GGCGauacGCC-AGUUGCGUACag--CCG- -5'
8178 3' -53.2 NC_001978.2 + 28030 0.68 0.656022
Target:  5'- gCCGCUcaGUGCGuUCuACGUcgacccGUCGGCg -3'
miRNA:   3'- -GGCGA--UACGCcAGuUGCGua----CAGCCG- -5'
8178 3' -53.2 NC_001978.2 + 14766 0.68 0.656022
Target:  5'- aCgGCUAgcaccgGCGGUCAuugGCGU-UGgcgCGGCa -3'
miRNA:   3'- -GgCGAUa-----CGCCAGU---UGCGuACa--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.