miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8180 3' -53.6 NC_001978.2 + 39499 0.66 0.733918
Target:  5'- -gUACuGCGAGuGUGGCGcCGUcaugacuucgAAGCGCg -3'
miRNA:   3'- gaAUG-CGCUU-CACCGUcGCG----------UUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 17735 0.66 0.733918
Target:  5'- gCUUGuCGCGAAG-GGCuucGGCGac-GCGUa -3'
miRNA:   3'- -GAAU-GCGCUUCaCCG---UCGCguuCGCG- -5'
8180 3' -53.6 NC_001978.2 + 16998 0.66 0.733918
Target:  5'- --cACGUG-AGUaGGUAGCGCccuGGGgGCa -3'
miRNA:   3'- gaaUGCGCuUCA-CCGUCGCG---UUCgCG- -5'
8180 3' -53.6 NC_001978.2 + 30777 0.66 0.732822
Target:  5'- --gGCGUGAAGgacGGCaAGgGCGucgagcacguaccGGCGCu -3'
miRNA:   3'- gaaUGCGCUUCa--CCG-UCgCGU-------------UCGCG- -5'
8180 3' -53.6 NC_001978.2 + 24395 0.66 0.731725
Target:  5'- -cUGCGCcugcccugGGCGacGUGCGAGCGCu -3'
miRNA:   3'- gaAUGCGcuuca---CCGU--CGCGUUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 3604 0.66 0.730627
Target:  5'- --cGCGCGAAgcGUGGCgugccgcuaacuccGGCGuCGAcaacGCGCa -3'
miRNA:   3'- gaaUGCGCUU--CACCG--------------UCGC-GUU----CGCG- -5'
8180 3' -53.6 NC_001978.2 + 10234 0.66 0.722912
Target:  5'- --aACGCGGcgaaGGUGGUugcggguugGGUGCuuauGGGCGCu -3'
miRNA:   3'- gaaUGCGCU----UCACCG---------UCGCG----UUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 35604 0.66 0.722912
Target:  5'- --gGCGCuGAGUgagucGGCAGCGgGuaugccgucuccGGCGCg -3'
miRNA:   3'- gaaUGCGcUUCA-----CCGUCGCgU------------UCGCG- -5'
8180 3' -53.6 NC_001978.2 + 23655 0.66 0.722912
Target:  5'- --aGCGCGucGgcaagGGUGGCGCu-GUGCu -3'
miRNA:   3'- gaaUGCGCuuCa----CCGUCGCGuuCGCG- -5'
8180 3' -53.6 NC_001978.2 + 251 0.66 0.711809
Target:  5'- --gGCaGCGGacucAGcGGCAGCGUuGGCGUu -3'
miRNA:   3'- gaaUG-CGCU----UCaCCGUCGCGuUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 21299 0.66 0.700621
Target:  5'- --aACGCGucGGcGGCAGCGCGAauGaUGCu -3'
miRNA:   3'- gaaUGCGCu-UCaCCGUCGCGUU--C-GCG- -5'
8180 3' -53.6 NC_001978.2 + 32016 0.66 0.689361
Target:  5'- --aAgGCGGAGcuucaGGCugAGCGgGGGCGCg -3'
miRNA:   3'- gaaUgCGCUUCa----CCG--UCGCgUUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 24987 0.66 0.689361
Target:  5'- --cACGcCGGAagcauguuGUGcGCAGCGUcGGCGCc -3'
miRNA:   3'- gaaUGC-GCUU--------CAC-CGUCGCGuUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 1130 0.66 0.678042
Target:  5'- uCUUGC-CGAAGUaccgggucggGGUGGCGUuGGCGUu -3'
miRNA:   3'- -GAAUGcGCUUCA----------CCGUCGCGuUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 11026 0.66 0.678042
Target:  5'- --gGCGCGAAGUcGCcugGGCGCu-GCGg -3'
miRNA:   3'- gaaUGCGCUUCAcCG---UCGCGuuCGCg -5'
8180 3' -53.6 NC_001978.2 + 37849 0.67 0.666676
Target:  5'- --gGgGCGAAGUGccccuuguCGGCGgGGGCGCc -3'
miRNA:   3'- gaaUgCGCUUCACc-------GUCGCgUUCGCG- -5'
8180 3' -53.6 NC_001978.2 + 18587 0.67 0.666676
Target:  5'- --gGCGCGucuccGGCAGCGUuacggauaucAGCGCg -3'
miRNA:   3'- gaaUGCGCuuca-CCGUCGCGu---------UCGCG- -5'
8180 3' -53.6 NC_001978.2 + 38118 0.67 0.666676
Target:  5'- --gACGUGGcagauGUGGgAGCGCAcGGgGCg -3'
miRNA:   3'- gaaUGCGCUu----CACCgUCGCGU-UCgCG- -5'
8180 3' -53.6 NC_001978.2 + 4597 0.67 0.655275
Target:  5'- cCUUcCGCGugcucgacGGUgGGCAGCGaCGGGCGg -3'
miRNA:   3'- -GAAuGCGCu-------UCA-CCGUCGC-GUUCGCg -5'
8180 3' -53.6 NC_001978.2 + 8602 0.67 0.655275
Target:  5'- --gGCGCGAAGcauCGGgGCAcGGCGCg -3'
miRNA:   3'- gaaUGCGCUUCaccGUCgCGU-UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.