miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8180 5' -62.2 NC_001978.2 + 35644 0.66 0.342156
Target:  5'- -cGCGCCGACGCUcaggGGCGccGUcuccGGCUCGa -3'
miRNA:   3'- gcCGCGGCUGCGA----CUGC--CAa---CCGGGC- -5'
8180 5' -62.2 NC_001978.2 + 37874 0.66 0.339773
Target:  5'- gGGCGCCGucccguacaacgucGCGCgUGAgCGGgucGGCCgGu -3'
miRNA:   3'- gCCGCGGC--------------UGCG-ACU-GCCaa-CCGGgC- -5'
8180 5' -62.2 NC_001978.2 + 29206 0.66 0.326494
Target:  5'- aGGCGCCGACcCgUGACGGacacagUGacaaGCCCc -3'
miRNA:   3'- gCCGCGGCUGcG-ACUGCCa-----AC----CGGGc -5'
8180 5' -62.2 NC_001978.2 + 36430 0.66 0.318865
Target:  5'- uGGCGCUGAgCGCUGAagggacGUUGGCg-- -3'
miRNA:   3'- gCCGCGGCU-GCGACUgc----CAACCGggc -5'
8180 5' -62.2 NC_001978.2 + 17747 0.66 0.318865
Target:  5'- gGGCuucGgCGACGCguacaagGACGGUccggggccgaauUGGUCCGa -3'
miRNA:   3'- gCCG---CgGCUGCGa------CUGCCA------------ACCGGGC- -5'
8180 5' -62.2 NC_001978.2 + 36153 0.66 0.318865
Target:  5'- uCGcGCGCCcAgGUgucGGCGGgugagUGGCCCGu -3'
miRNA:   3'- -GC-CGCGGcUgCGa--CUGCCa----ACCGGGC- -5'
8180 5' -62.2 NC_001978.2 + 19096 0.66 0.318109
Target:  5'- uCGGCccCCGcCGaCUGACcuucacgGGUUGGUCCGg -3'
miRNA:   3'- -GCCGc-GGCuGC-GACUG-------CCAACCGGGC- -5'
8180 5' -62.2 NC_001978.2 + 36892 0.66 0.31137
Target:  5'- aGGuCGCUGcCGCUGcCGGUcGGCaCCc -3'
miRNA:   3'- gCC-GCGGCuGCGACuGCCAaCCG-GGc -5'
8180 5' -62.2 NC_001978.2 + 17593 0.66 0.31137
Target:  5'- cCGG-GUCGGCGgaGACGGagccGCCCGc -3'
miRNA:   3'- -GCCgCGGCUGCgaCUGCCaac-CGGGC- -5'
8180 5' -62.2 NC_001978.2 + 3551 0.66 0.31137
Target:  5'- gGGCGCUGugGUUGA-GGUaccgGGCaCGa -3'
miRNA:   3'- gCCGCGGCugCGACUgCCAa---CCGgGC- -5'
8180 5' -62.2 NC_001978.2 + 37436 0.66 0.31137
Target:  5'- uCGGCGCCGuuGCUuc--GUUGGCuCCGu -3'
miRNA:   3'- -GCCGCGGCugCGAcugcCAACCG-GGC- -5'
8180 5' -62.2 NC_001978.2 + 32988 0.67 0.299658
Target:  5'- aGGCGUaCGACGCUGG-GGUgaagcuucuucgaGCCCGg -3'
miRNA:   3'- gCCGCG-GCUGCGACUgCCAac-----------CGGGC- -5'
8180 5' -62.2 NC_001978.2 + 30654 0.67 0.299658
Target:  5'- gCGGCGCUugaaGACguGCUGACGGUccccagcgacccgacUGaGCgCCGg -3'
miRNA:   3'- -GCCGCGG----CUG--CGACUGCCA---------------AC-CG-GGC- -5'
8180 5' -62.2 NC_001978.2 + 36463 0.67 0.27591
Target:  5'- aCGGCGUgaCGAaGCUgGGCGcgUGGCCCGu -3'
miRNA:   3'- -GCCGCG--GCUgCGA-CUGCcaACCGGGC- -5'
8180 5' -62.2 NC_001978.2 + 39849 0.67 0.26988
Target:  5'- gGGCGUCGGCGCgcuccgcaacaaGGUUcGCCCGu -3'
miRNA:   3'- gCCGCGGCUGCGacug--------CCAAcCGGGC- -5'
8180 5' -62.2 NC_001978.2 + 13577 0.67 0.269217
Target:  5'- uCGGCGUCGacuccguucGCGCUGACGcaUGGUgUGa -3'
miRNA:   3'- -GCCGCGGC---------UGCGACUGCcaACCGgGC- -5'
8180 5' -62.2 NC_001978.2 + 29837 0.68 0.249924
Target:  5'- gGGUGCCGACuccuGCcGACGGggGGUgaucaguuCCGg -3'
miRNA:   3'- gCCGCGGCUG----CGaCUGCCaaCCG--------GGC- -5'
8180 5' -62.2 NC_001978.2 + 1847 0.68 0.243752
Target:  5'- -cGCGCUGACGCUgGGCaGUgccGCCCGu -3'
miRNA:   3'- gcCGCGGCUGCGA-CUGcCAac-CGGGC- -5'
8180 5' -62.2 NC_001978.2 + 41415 0.68 0.243752
Target:  5'- gCGGCuCCGAaGUUGGCGGcgUGuGCCCu -3'
miRNA:   3'- -GCCGcGGCUgCGACUGCCa-AC-CGGGc -5'
8180 5' -62.2 NC_001978.2 + 5630 0.69 0.214772
Target:  5'- cCGGCGCCaACGCUGccuuCGGUgaGGCUg- -3'
miRNA:   3'- -GCCGCGGcUGCGACu---GCCAa-CCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.