miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8181 5' -62.2 NC_001978.2 + 35232 0.66 0.314681
Target:  5'- aCCGGgGcGCuGaCGGCGaacucagaaGCCGGGCAa- -3'
miRNA:   3'- -GGCCgCaCGcC-GCCGU---------UGGCCCGUag -5'
8181 5' -62.2 NC_001978.2 + 25563 0.66 0.307221
Target:  5'- aCGGCGUGacccGUGGCGcCCagGGGCGUg -3'
miRNA:   3'- gGCCGCACgc--CGCCGUuGG--CCCGUAg -5'
8181 5' -62.2 NC_001978.2 + 15558 0.66 0.292709
Target:  5'- gUCGGCGUaGUcgGGCGGCAG--GGGCGa- -3'
miRNA:   3'- -GGCCGCA-CG--CCGCCGUUggCCCGUag -5'
8181 5' -62.2 NC_001978.2 + 31417 0.67 0.278739
Target:  5'- aUCGG-GUGCGGCaGGCAaGCCgcuugaucagGGGCAc- -3'
miRNA:   3'- -GGCCgCACGCCG-CCGU-UGG----------CCCGUag -5'
8181 5' -62.2 NC_001978.2 + 36951 0.67 0.265304
Target:  5'- aCCGGCa-GCGGCaGCGaccucaACCGGGU-UCa -3'
miRNA:   3'- -GGCCGcaCGCCGcCGU------UGGCCCGuAG- -5'
8181 5' -62.2 NC_001978.2 + 3548 0.67 0.265304
Target:  5'- gCCgGGCGcUGUGGUugaGGU-ACCGGGCAc- -3'
miRNA:   3'- -GG-CCGC-ACGCCG---CCGuUGGCCCGUag -5'
8181 5' -62.2 NC_001978.2 + 1757 0.67 0.265304
Target:  5'- gUCGGCGgacGcCGGaCGGCAACaGGGCu-- -3'
miRNA:   3'- -GGCCGCa--C-GCC-GCCGUUGgCCCGuag -5'
8181 5' -62.2 NC_001978.2 + 33932 0.67 0.258786
Target:  5'- gUCGGCGUacacgcgcaCGGuCGGCAcCCGGGUAa- -3'
miRNA:   3'- -GGCCGCAc--------GCC-GCCGUuGGCCCGUag -5'
8181 5' -62.2 NC_001978.2 + 25961 0.67 0.252399
Target:  5'- aCUGGCGUGa-GC-GCGACCcGGGCAa- -3'
miRNA:   3'- -GGCCGCACgcCGcCGUUGG-CCCGUag -5'
8181 5' -62.2 NC_001978.2 + 8900 0.68 0.248629
Target:  5'- aCgGGCGUGCGGCGcucaguGCccccgcuucgcccccGACCGGcGCGcuUCg -3'
miRNA:   3'- -GgCCGCACGCCGC------CG---------------UUGGCC-CGU--AG- -5'
8181 5' -62.2 NC_001978.2 + 1069 0.68 0.228142
Target:  5'- cCCGGCGUGCGGUaaaGCucuucgccCCGGaGCAc- -3'
miRNA:   3'- -GGCCGCACGCCGc--CGuu------GGCC-CGUag -5'
8181 5' -62.2 NC_001978.2 + 27514 0.68 0.222395
Target:  5'- aCCGGUa-GCGGCGGCA---GGcGCGUCa -3'
miRNA:   3'- -GGCCGcaCGCCGCCGUuggCC-CGUAG- -5'
8181 5' -62.2 NC_001978.2 + 12167 0.68 0.222395
Target:  5'- aCGGCuG-GgGGCGGCAcgUGGGCAUg -3'
miRNA:   3'- gGCCG-CaCgCCGCCGUugGCCCGUAg -5'
8181 5' -62.2 NC_001978.2 + 14153 0.68 0.222395
Target:  5'- gCCGGuCGaGUGGuCGGCuAUCGGGCGc- -3'
miRNA:   3'- -GGCC-GCaCGCC-GCCGuUGGCCCGUag -5'
8181 5' -62.2 NC_001978.2 + 8329 0.68 0.222395
Target:  5'- gUCGGaCGUcGUGGCGGCAACUuacgaacGGCGUa -3'
miRNA:   3'- -GGCC-GCA-CGCCGCCGUUGGc------CCGUAg -5'
8181 5' -62.2 NC_001978.2 + 24939 0.69 0.205356
Target:  5'- uCCGGCGUGCGcaaGuGCAACCugagcaaGGGCGc- -3'
miRNA:   3'- -GGCCGCACGCcg-C-CGUUGG-------CCCGUag -5'
8181 5' -62.2 NC_001978.2 + 36057 0.69 0.180733
Target:  5'- cCCGG-GU-CGGCGGCAGucuCCGgGGUGUCg -3'
miRNA:   3'- -GGCCgCAcGCCGCCGUU---GGC-CCGUAG- -5'
8181 5' -62.2 NC_001978.2 + 34697 0.71 0.150105
Target:  5'- gUCGGCGU-CGGCucgaacccGGCaAGCUGGGCGUUc -3'
miRNA:   3'- -GGCCGCAcGCCG--------CCG-UUGGCCCGUAG- -5'
8181 5' -62.2 NC_001978.2 + 30779 0.71 0.131199
Target:  5'- gCGGCGUGaaGGaCGGCAa--GGGCGUCg -3'
miRNA:   3'- gGCCGCACg-CC-GCCGUuggCCCGUAG- -5'
8181 5' -62.2 NC_001978.2 + 25460 0.72 0.127691
Target:  5'- gCGGCGUaGuCGGCGGCAucCUGGGUg-- -3'
miRNA:   3'- gGCCGCA-C-GCCGCCGUu-GGCCCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.