miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8182 3' -58.6 NC_001978.2 + 26275 0.66 0.502664
Target:  5'- -aGGCCGGaCGCguacuugaucCGGCCGuCAgucCAUGCCa -3'
miRNA:   3'- gaCUGGCC-GCG----------GCUGGU-GUa--GUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 36827 0.66 0.499582
Target:  5'- ---uCCGGCGUCGGCUccggaaggACGUCcugaacggccugggGCGCCg -3'
miRNA:   3'- gacuGGCCGCGGCUGG--------UGUAG--------------UGCGG- -5'
8182 3' -58.6 NC_001978.2 + 19676 0.66 0.492424
Target:  5'- cCUGAaugUCGGCGUCGgucACCACAacgaacgugccgUUGCGCUg -3'
miRNA:   3'- -GACU---GGCCGCGGC---UGGUGU------------AGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 22630 0.66 0.482282
Target:  5'- -cGACCGGCuuaCCGAUCACcuucCGCgaGCCg -3'
miRNA:   3'- gaCUGGCCGc--GGCUGGUGua--GUG--CGG- -5'
8182 3' -58.6 NC_001978.2 + 32202 0.66 0.482282
Target:  5'- gCUGAgggaUGGCGCaCGGCUgaggcugagcgGCAgCGCGCCa -3'
miRNA:   3'- -GACUg---GCCGCG-GCUGG-----------UGUaGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 15950 0.66 0.482282
Target:  5'- -cGACgGGCGCCGACUcgACGUU-C-CCg -3'
miRNA:   3'- gaCUGgCCGCGGCUGG--UGUAGuGcGG- -5'
8182 3' -58.6 NC_001978.2 + 29404 0.66 0.482282
Target:  5'- gCUGACCuagGGgGCCGGuCCugGgggucgcuguaUgGCGCCg -3'
miRNA:   3'- -GACUGG---CCgCGGCU-GGugU-----------AgUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 21948 0.66 0.482282
Target:  5'- ---uUCGGCagcauGCCGAuaaCCgACGUCACGCCc -3'
miRNA:   3'- gacuGGCCG-----CGGCU---GG-UGUAGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 5122 0.66 0.472242
Target:  5'- ---uCCGGCgcucagcguuccGCCGACCACGaCgacgACGCCg -3'
miRNA:   3'- gacuGGCCG------------CGGCUGGUGUaG----UGCGG- -5'
8182 3' -58.6 NC_001978.2 + 1586 0.66 0.472242
Target:  5'- -cGACCGGgGCgacgcucagCGACagauCAUCGCuGCCg -3'
miRNA:   3'- gaCUGGCCgCG---------GCUGgu--GUAGUG-CGG- -5'
8182 3' -58.6 NC_001978.2 + 36965 0.66 0.472242
Target:  5'- gUGGCagGGUGCCGACCgGCAgcggcaGCGaCCu -3'
miRNA:   3'- gACUGg-CCGCGGCUGG-UGUag----UGC-GG- -5'
8182 3' -58.6 NC_001978.2 + 22058 0.66 0.462309
Target:  5'- aCUGAauGGCGCCu-UCGCGgUCGCGCg -3'
miRNA:   3'- -GACUggCCGCGGcuGGUGU-AGUGCGg -5'
8182 3' -58.6 NC_001978.2 + 5580 0.66 0.462309
Target:  5'- cCUGACgGGUaCCGGCaCGgGUCA-GCCg -3'
miRNA:   3'- -GACUGgCCGcGGCUG-GUgUAGUgCGG- -5'
8182 3' -58.6 NC_001978.2 + 12567 0.66 0.452486
Target:  5'- -cGACCGGgaaCGCCGACgagACGgcagCACuGCCg -3'
miRNA:   3'- gaCUGGCC---GCGGCUGg--UGUa---GUG-CGG- -5'
8182 3' -58.6 NC_001978.2 + 25860 0.66 0.452486
Target:  5'- -cGGCCGGaGUCGGCU---UCACGCUg -3'
miRNA:   3'- gaCUGGCCgCGGCUGGuguAGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 22262 0.66 0.452486
Target:  5'- aUGGCuCGaCGCCGACgGCAaCccgACGCCg -3'
miRNA:   3'- gACUG-GCcGCGGCUGgUGUaG---UGCGG- -5'
8182 3' -58.6 NC_001978.2 + 26083 0.66 0.45151
Target:  5'- -cGuACCGGCGCCGuuCAggugucgagcacuCAggGCGCCg -3'
miRNA:   3'- gaC-UGGCCGCGGCugGU-------------GUagUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 12764 0.67 0.442778
Target:  5'- gUGGCgacGCuGCCGACCGgCAUUACGCg -3'
miRNA:   3'- gACUGgc-CG-CGGCUGGU-GUAGUGCGg -5'
8182 3' -58.6 NC_001978.2 + 36282 0.67 0.442778
Target:  5'- -cGGCgGGUGCUGACCGgGggGCGUUg -3'
miRNA:   3'- gaCUGgCCGCGGCUGGUgUagUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 18159 0.67 0.433189
Target:  5'- ---gUCGGCGCCGgaguaACCGCGcUUGCGCUg -3'
miRNA:   3'- gacuGGCCGCGGC-----UGGUGU-AGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.