miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8182 3' -58.6 NC_001978.2 + 13558 0.68 0.341961
Target:  5'- gCUGAaguacacgcccgguUCGGCGUCGACUcCGUuCGCGCUg -3'
miRNA:   3'- -GACU--------------GGCCGCGGCUGGuGUA-GUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 33846 0.7 0.288335
Target:  5'- -gGGCCgacggcguuacccgGGUGCCGACCgugcGCGUgUACGCCg -3'
miRNA:   3'- gaCUGG--------------CCGCGGCUGG----UGUA-GUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 25491 0.7 0.290492
Target:  5'- aUGACUGGC-CCGACUucgugucgACGUCGuuCGCCc -3'
miRNA:   3'- gACUGGCCGcGGCUGG--------UGUAGU--GCGG- -5'
8182 3' -58.6 NC_001978.2 + 22726 0.69 0.305193
Target:  5'- cCUGGCauucguCGGCGUCGugUuCGUCGCuGCCg -3'
miRNA:   3'- -GACUG------GCCGCGGCugGuGUAGUG-CGG- -5'
8182 3' -58.6 NC_001978.2 + 21984 0.69 0.312755
Target:  5'- aUGGCa-GCGCgCGACCGCgAagGCGCCa -3'
miRNA:   3'- gACUGgcCGCG-GCUGGUG-UagUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 5541 0.69 0.328302
Target:  5'- --cGCCGGU-CCGGCCAUcgGUgACGCCa -3'
miRNA:   3'- gacUGGCCGcGGCUGGUG--UAgUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 18107 0.69 0.328302
Target:  5'- ---uCCGGCGCCGACgCugAcggUugGCCc -3'
miRNA:   3'- gacuGGCCGCGGCUG-GugUa--GugCGG- -5'
8182 3' -58.6 NC_001978.2 + 35835 0.69 0.328302
Target:  5'- -cGACCugGGCGCCGACCu--UCccuUGCCc -3'
miRNA:   3'- gaCUGG--CCGCGGCUGGuguAGu--GCGG- -5'
8182 3' -58.6 NC_001978.2 + 41278 0.69 0.336288
Target:  5'- --aGCuCGaCGUCGACCACAUCAaGCCg -3'
miRNA:   3'- gacUG-GCcGCGGCUGGUGUAGUgCGG- -5'
8182 3' -58.6 NC_001978.2 + 8528 0.7 0.26949
Target:  5'- -aGGCCGguucGCGCCGugCcccgauGCuUCGCGCCa -3'
miRNA:   3'- gaCUGGC----CGCGGCugG------UGuAGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 24162 0.7 0.262767
Target:  5'- -cGACCGGCGuuGACUcCgGUUACgGCCu -3'
miRNA:   3'- gaCUGGCCGCggCUGGuG-UAGUG-CGG- -5'
8182 3' -58.6 NC_001978.2 + 360 0.71 0.243414
Target:  5'- -cGACCGucGCGCCGACCuguUGUCGCucaucgaaGCCg -3'
miRNA:   3'- gaCUGGC--CGCGGCUGGu--GUAGUG--------CGG- -5'
8182 3' -58.6 NC_001978.2 + 12387 0.78 0.077278
Target:  5'- aUGugCcgaaGGCGUCGACCACGUuCACGCUg -3'
miRNA:   3'- gACugG----CCGCGGCUGGUGUA-GUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 37379 0.76 0.108403
Target:  5'- -cGAagcaaCGGCGCCGACCAUcgauaGCGCCg -3'
miRNA:   3'- gaCUg----GCCGCGGCUGGUGuag--UGCGG- -5'
8182 3' -58.6 NC_001978.2 + 12846 0.76 0.114622
Target:  5'- -cGGgUGGCGUCGGCCGUAUCGCGCUu -3'
miRNA:   3'- gaCUgGCCGCGGCUGGUGUAGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 33181 0.74 0.150999
Target:  5'- -cGGuCgGGUGCuCGACCACcuUCACGCCg -3'
miRNA:   3'- gaCU-GgCCGCG-GCUGGUGu-AGUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 15408 0.74 0.159435
Target:  5'- uCUGACCGGCGUCGuUgGCG-CGCGCa -3'
miRNA:   3'- -GACUGGCCGCGGCuGgUGUaGUGCGg -5'
8182 3' -58.6 NC_001978.2 + 33447 0.72 0.21947
Target:  5'- -aGACCGcGCGCUGAgCCGCAUaCACGa- -3'
miRNA:   3'- gaCUGGC-CGCGGCU-GGUGUA-GUGCgg -5'
8182 3' -58.6 NC_001978.2 + 22798 0.71 0.225261
Target:  5'- cCUGAUUGGCaugugGCaCGGCCACA--ACGCCg -3'
miRNA:   3'- -GACUGGCCG-----CG-GCUGGUGUagUGCGG- -5'
8182 3' -58.6 NC_001978.2 + 11650 0.71 0.24279
Target:  5'- -gGACCGGCGCCGgacgacccgguaaGCCGCuUCAC-UCa -3'
miRNA:   3'- gaCUGGCCGCGGC-------------UGGUGuAGUGcGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.